Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G02810 503 / 4e-174 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT2G47550 476 / 5e-164 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT4G02330 473 / 8e-163 AtPME41, ATPMEPCRB pectin methylesterase 41, Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT3G10720 443 / 3e-150 Plant invertase/pectin methylesterase inhibitor superfamily (.1.2) AT5G04970 441 / 2e-149 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT2G45220 367 / 4e-122 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT3G60730 363 / 1e-120 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT3G05620 352 / 2e-115 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT3G43270 350 / 4e-115 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT1G11580 346 / 3e-113 ATPMEPCRA methylesterase PCR A (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013416 [exp] 726 / 0 AT1G02810 519 / 2e-180 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10029866 [exp] 457 / 3e-150 AT1G02810 511 / 6e-170 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10008203 [exp] 402 / 4e-135 AT4G02320 497 / 2e-172 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10028882 [exp] 402 / 1e-134 AT5G04970 704 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10031470 [exp] 401 / 1e-134 AT4G02330 573 / 0.0 pectin methylesterase 41, Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10015210 [exp] 397 / 8e-133 AT4G02330 556 / 0.0 pectin methylesterase 41, Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10008937 [exp] 397 / 3e-132 AT3G10720 704 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1.2) Lus10038917 [exp] 384 / 3e-128 AT2G45220 630 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10006103 [exp] 377 / 2e-126 AT2G45220 592 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G127000 [exp] 633 / 0 AT1G02810 712 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.002G202600 [exp] 622 / 0 AT1G02810 749 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.005G022800 [exp] 531 / 0 AT4G02330 571 / 0.0 pectin methylesterase 41, Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.010G247700 [exp] 469 / 4e-161 AT3G10720 746 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1.2) Potri.008G011100 [exp] 449 / 6e-153 AT3G10720 744 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1.2) Potri.002G202500 [exp] 407 / 6e-137 AT4G02320 576 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.014G067100 [exp] 392 / 1e-131 AT2G45220 691 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.002G145500 [exp] 392 / 1e-131 AT2G45220 670 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.012G126800 [exp] 392 / 2e-131 AT2G45220 637 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.015G127700 [exp] 387 / 1e-129 AT2G45220 680 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [flax] [poplar] Pec_lyase-like PF01095 [flax] [poplar] Pectinesterase Pectinesterase CL0268 [flax] [poplar] PF04043 [flax] [poplar] PMEI Plant invertase/pectin methylesterase inhibitor
Representative CDS sequence Show only first row Show all	>Lus10010309 pacid=23169488 polypeptide=Lus10010309 locus=Lus10010309.g ID=Lus10010309.BGIv1.0 annot-version=v1.0 ATGACTTCAAAATCACTCTCACCTCAAGCCCCACTTGTTCTTCTACTTCTTCTTCTCCTCCTCCTCTTCACAATCTCTCCATCTTTGGGAGACTCTCCTG AAGCCATTTGCAAGTCAACCCCGGATCCTTCCTATTGCAAATCGGTCCTTCCCGGTAACAACCAATCCGCCAACGCCTACGACTACACCCGATTCTCGGT CCGCAAGTCCATCTCCGAAGCCAACAAGTTCCTCAAACTGGTCGAGTCCTACCAATCCCCTCGCCGCAGGTCCTCCCTGTCTGCAAGCGCAAATGTCGCC ACGACCACGAACGAAACGCTCCCTGCCTCGTCGGTCGATAGCGTCCAGACATTCCTCAGCGCCATCTTGACCAACCAGCAGACCTGCCTGGACGGTTTGA AGACCGCGTCCTCCTCTTGGGACGACCAGCTCACCCGCCCTCTCTCGAGCGATACCAAACTGTACTCGGTCTCCCTGGCCTTGTTCGCCAAGACATGGAA GCACAAGGCCAAGAAATTGAAAAAAGGATCGAAAGTTGCAAGCTTTTTGACAAACGTGCGACCCTCTTCCTACTCCTTCCATAACGGGAGACAATACGGT CGTGGTGAACCAGAACGGGACGCTGTGGCGGCCGCTCCTAACAACACCGATGGCTCTAAGGGATACTTCATGATATACGTGACAGCCGGAGTTTACGAGG AGTACGTTTCGATTCCGAAGAACAAGAGGTATTTGATGATGGTCGGAGATGGCATCAATCAGACGATCATTACGGGGAATCGTAGCGTCGTTGATGGATG GACCACTTTCAACTCCGCTACATTTGCGGTGGTGTCACCAAACTTTGTAGCGGTGAACATAACCATCCGAAACACGGCCGGTGCAGTCAAGCATCAAGCG GTAGCCCTTCGAAGCGGAGGCGATTTCTCCACGTTCTACCAATGCAGCTTCGAGGGCTACCAAGACACGTTGTACACGCATTCCCTGCGACAATTTTACC GAGAATGTGACATTTACGGCACAGCGGACTTCATCTTCGGAAATGCGGCTGTCGTCCTCCAGAACTGCAACATCTACCCTAGGCTTCCGATGAGCGGGCA GTTCAACGCCATCACGGCGCAGGGCCGGACGGATCCTAATCAGAACACGGGTACCTCCATCCACAACTGCAACATCAGGGCCGCCCCAGATCTTGCCGCG TTGGGGAATTCCTCCACCGTCAAGACTTATCTGGGACGGCCCTGGAAGGAGTACTCCAGGACGGTGTACTTGCGGACTTTTATGGACGGGTTGATAGATC CTGCCGGGTGGCGCGAGTGGGATGGGCAGTTTGCACTCGCCACGTTGTACTACGCTGAGTACGAGAATAGTGGGCCCGGGTCGAACACAAGTGCCCGGGT GACGTGGCCAGGGTACACAGTGATCACGAATGAGACGGATGCATCTAATTTTACTGTGTCTGGCTTTTTACTGGGGAATGATTGGATTCCGAAGACTGGA GTTTCTTTCACCGCTGATTTGATTTGA
AA sequence Show only first row Show all	>Lus10010309 pacid=23169488 polypeptide=Lus10010309 locus=Lus10010309.g ID=Lus10010309.BGIv1.0 annot-version=v1.0 MTSKSLSPQAPLVLLLLLLLLLFTISPSLGDSPEAICKSTPDPSYCKSVLPGNNQSANAYDYTRFSVRKSISEANKFLKLVESYQSPRRRSSLSASANVA TTTNETLPASSVDSVQTFLSAILTNQQTCLDGLKTASSSWDDQLTRPLSSDTKLYSVSLALFAKTWKHKAKKLKKGSKVASFLTNVRPSSYSFHNGRQYG RGEPERDAVAAAPNNTDGSKGYFMIYVTAGVYEEYVSIPKNKRYLMMVGDGINQTIITGNRSVVDGWTTFNSATFAVVSPNFVAVNITIRNTAGAVKHQA VALRSGGDFSTFYQCSFEGYQDTLYTHSLRQFYRECDIYGTADFIFGNAAVVLQNCNIYPRLPMSGQFNAITAQGRTDPNQNTGTSIHNCNIRAAPDLAA LGNSSTVKTYLGRPWKEYSRTVYLRTFMDGLIDPAGWREWDGQFALATLYYAEYENSGPGSNTSARVTWPGYTVITNETDASNFTVSGFLLGNDWIPKTG VSFTADLI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G02810			Plant invertase/pectin methyle...		Lus10010309 [exp]	0	1
AT1G02810			Plant invertase/pectin methyle...		Lus10013416 [exp]	1.0	0.8267
AT5G05190			Protein of unknown function (D...		Lus10034250 [exp]	3.5	0.7999
					Lus10005523 [exp]	4.9	0.8135
AT3G54040			PAR1 protein (.1)		Lus10017196 [exp]	5.9	0.7964
AT1G75170			Sec14p-like phosphatidylinosit...		Lus10010804 [exp]	6.0	0.7662
AT1G75130		CYP721A1	"cytochrome P450, family 721, ...		Lus10010821 [exp]	6.5	0.7686
AT4G23990		ATCSLG3	ARABIDOPSIS THALIANA CELLULOSE...		Lus10003196 [exp]	8.8	0.7822
AT2G29120		ATGLR2.7	GLUTAMATE RECEPTOR 2.7, gluta...		Lus10013952 [exp]	9.5	0.7857
AT5G01740			Nuclear transport factor 2 (NT...		Lus10017421 [exp]	10.2	0.8038
AT3G62040			Haloacid dehalogenase-like hyd...		Lus10009256 [exp]	11.0	0.7625

Compare expression of checked genes

Lus10010309 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.