Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G40940 872 / 0 ERS1 ethylene response sensor 1 (.1) AT1G66340 827 / 0 AtETR1, EIN1, ETR1 ETHYLENE RESPONSE 1, ETHYLENE RESPONSE, ETHYLENE INSENSITIVE 1, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1) AT3G23150 358 / 1e-113 ETR2 ethylene response 2, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1) AT3G04580 349 / 4e-110 EIN4 ETHYLENE INSENSITIVE 4, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1.2) AT1G04310 298 / 3e-92 ERS2 ethylene response sensor 2 (.1) AT5G10720 114 / 4e-26 CKI2, AHK5 CYTOKININ INDEPENDENT 2, histidine kinase 5 (.1) AT2G17820 112 / 2e-25 AHK1, ATHK1 histidine kinase 1 (.1) AT1G27320 107 / 8e-24 AHK3 histidine kinase 3 (.1) AT2G01830 94 / 2e-19 CRE1, AHK4, WOL1, WOL, ATCRE1 WOODEN LEG 1, WOODEN LEG, CYTOKININ RESPONSE 1, ARABIDOPSIS HISTIDINE KINASE 4, CHASE domain containing histidine kinase protein (.1.2.3) AT5G35750 92 / 6e-19 AHK2 histidine kinase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013415 [exp] 1247 / 0 AT2G40940 907 / 0.0 ethylene response sensor 1 (.1) Lus10007357 [exp] 861 / 0 AT1G66340 1211 / 0.0 ETHYLENE RESPONSE 1, ETHYLENE RESPONSE, ETHYLENE INSENSITIVE 1, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1) Lus10020778 [exp] 854 / 0 AT1G66340 1220 / 0.0 ETHYLENE RESPONSE 1, ETHYLENE RESPONSE, ETHYLENE INSENSITIVE 1, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1) Lus10031382 [exp] 852 / 0 AT1G66340 1206 / 0.0 ETHYLENE RESPONSE 1, ETHYLENE RESPONSE, ETHYLENE INSENSITIVE 1, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1) Lus10022203 [exp] 387 / 2e-124 AT3G23150 882 / 0.0 ethylene response 2, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1) Lus10021212 [exp] 384 / 1e-123 AT3G23150 890 / 0.0 ethylene response 2, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1) Lus10021880 [exp] 382 / 7e-123 AT3G23150 857 / 0.0 ethylene response 2, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1) Lus10041159 [exp] 379 / 1e-121 AT3G23150 851 / 0.0 ethylene response 2, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1) Lus10006574 [exp] 367 / 4e-116 AT3G04580 957 / 0.0 ETHYLENE INSENSITIVE 4, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G201500 [exp] 1008 / 0 AT2G40940 897 / 0.0 ethylene response sensor 1 (.1) Potri.001G204200 [exp] 863 / 0 AT1G66340 1216 / 0.0 ETHYLENE RESPONSE 1, ETHYLENE RESPONSE, ETHYLENE INSENSITIVE 1, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1) Potri.003G032300 [exp] 862 / 0 AT1G66340 1228 / 0.0 ETHYLENE RESPONSE 1, ETHYLENE RESPONSE, ETHYLENE INSENSITIVE 1, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1) Potri.008G164400 [exp] 386 / 2e-124 AT3G23150 889 / 0.0 ethylene response 2, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1) Potri.010G074300 [exp] 383 / 2e-123 AT3G23150 877 / 0.0 ethylene response 2, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1) Potri.019G014300 [exp] 381 / 1e-122 AT3G04580 959 / 0.0 ETHYLENE INSENSITIVE 4, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1.2) Potri.013G044100 [exp] 380 / 4e-122 AT3G04580 960 / 0.0 ETHYLENE INSENSITIVE 4, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1.2) Potri.003G171000 [exp] 102 / 2e-22 AT1G27320 1425 / 0.0 histidine kinase 3 (.1) Potri.001G057400 [exp] 102 / 2e-22 AT1G27320 1384 / 0.0 histidine kinase 3 (.1) Potri.005G111700 [exp] 102 / 3e-22 AT2G17820 1435 / 0.0 histidine kinase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0161 [flax] [poplar] GAF PF01590 [flax] [poplar] GAF GAF domain CL0025 [flax] [poplar] His_Kinase_A PF02518 [flax] [poplar] HATPase_c Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CL0025 [flax] [poplar] His_Kinase_A PF00512 [flax] [poplar] HisKA His Kinase A (phospho-acceptor) domain
Representative CDS sequence Show only first row Show all	>Lus10010310 pacid=23169551 polypeptide=Lus10010310 locus=Lus10010310.g ID=Lus10010310.BGIv1.0 annot-version=v1.0 ATGGAGTCCTGCGATTGCATCGACACACAATTTCCACACGACGAACTTCTGGTGAAATACCAGTACATCTCAGACGTACTAATCGCAGCCGCATACTTCT CCATCCCAGTAGAACTCATCTACTTCGTCCAGAAATCAGCATTCTTCCCCTACAGATGGGTCCTAATGCAATTCGGCGCCTTCATCGTCCTCTGCGGCGC AACACACTTCATAAACCTCTGGACTTTCTACGTCCACTCCAAAACCGTCGCCATAGTAATGACAATCGCCAAGATGTCCTGCGCGATCGTCTCATGCGCC ACCGCATTGATGCTCGTCCACATAATCCCCGACCTGCTGGGGGTCAAGACTCGGGAGCTTTTCCTCAAGAACAAGGCAGAAGAGCTGGACCGGGAGATGG GGCTGATTCTTACTCAGGAAGAAACCGGGAGACACGTCAGGATGCTGACTCACGAGATTCGAAGCACGTTGGACCGGCATACTATATTGCGGACCACGCT TGTCGAGCTTGGGAGGACGTTGGGGCTCGAAGAGTGTGCTTTGTGGATGCCGTCGAGGTCCGGGTCGGAGCTCCAGCTGTCTCATACGCTGAACTATAAG ATACAAATGGGGTCCAGTGTTCAGATTAATAATTCGACGGTTGGTGACGTGTTTAATAGTGTGAGGGCGATGAGGATACCTCATAACTGTCCGCTGGCTA GGAATATTAGGCCGCTGGTGGGGAAATATCAGCCTCCGGAGGTCGTTGCTGTGCGTGTTCCTTTGCTTCACCTTTCTGATTTTCGGATTAATGATTGGCC GGAATTGTCTGCCAAAAGCTATGCGGTGATGGTGCTCATTCTTCCGACGGATACTGCGAGGAAATGGCGCGAGCATGAGCTGGAACTTGTTGAAGTTGTT GCTGATCAGGTAGCAGTTGCTCTATCACACGCTGCTATACTCGAAGAATCTATGCGGGCACGCGATCAGCTCATGGAGCAAAACGTCGCTCTAAAATCAG CTCGTCAGGAAGCAGAGCTAGCAATCCATGCCCGCAACGATTTCCTGGCTGTGATGAACCATGAGATGAGGACACCAATGCATGCAATCATTGCACTATC TTCACTTCTTCTGGAGACAGAGCTGAGTCCTGAACAAAGAGCAATGTTGGAGACCATACTAAAGAGTAGTAACTTATTAGCAAGACTCACTAATGATGTT CTAGACCTTTCTAGGCTTGAGGATGGTAGCCTGGAGTTGGATACCGGTCTGTTTGACCTTCATGAAGTCTTCAAGGAGGCTGTTCATTTGATAAAGCCTA TTGCTGCTGTGAAGAAACTGTCCATGACTTTGTTCATGGCGCCAGACTTGCCTGGTTATGCTGTTGGTGACGAGAAGCGGCTTCTGCAAACGATTCTGAA CATTGCTGGTAATGCTGTCAAGTTTACTAAAGACGGTCACGTCTCGCTCATGGCATCGGTTGCGAAAACAGATTCATTGAGAGACTGGCGGCCGCCTGAG TTTTATCCGATGTCAAGTGATGGCCACTTCTACCTACGCGTGCAGGTGACAGATTCAGGCAGTGGTGTTTCCCCACAGGATATACCTTCACTGTTTCTGA AATTCGCTCAGCCACGAAGCGGGTCTAGCCGAGCTAACAGTGGCAACGGACTCGGCCTCGCCATTTGTAAGCGGTTTGTGAACCTGATGGGAGGCCACAT ATGGTTGGAGAGTGAAGGGCTGAATAAAGGCTGTAAGGCCATATTCATTGTGAAGCTTGGTAATGCATCAGCTGATCATGGAACTTCAAATGCAGTAACC TCGCAGCAGCAGCAGCAGACAGCGTTGAGAAACCACGCGAGTGCAGGGCACATCGAGCATCACAAGCCGGTGTTTCGAGACATGGATGGTTCTTCTGGCC AGCGGTACCAGAGAAGCCTTTGA
AA sequence Show only first row Show all	>Lus10010310 pacid=23169551 polypeptide=Lus10010310 locus=Lus10010310.g ID=Lus10010310.BGIv1.0 annot-version=v1.0 MESCDCIDTQFPHDELLVKYQYISDVLIAAAYFSIPVELIYFVQKSAFFPYRWVLMQFGAFIVLCGATHFINLWTFYVHSKTVAIVMTIAKMSCAIVSCA TALMLVHIIPDLLGVKTRELFLKNKAEELDREMGLILTQEETGRHVRMLTHEIRSTLDRHTILRTTLVELGRTLGLEECALWMPSRSGSELQLSHTLNYK IQMGSSVQINNSTVGDVFNSVRAMRIPHNCPLARNIRPLVGKYQPPEVVAVRVPLLHLSDFRINDWPELSAKSYAVMVLILPTDTARKWREHELELVEVV ADQVAVALSHAAILEESMRARDQLMEQNVALKSARQEAELAIHARNDFLAVMNHEMRTPMHAIIALSSLLLETELSPEQRAMLETILKSSNLLARLTNDV LDLSRLEDGSLELDTGLFDLHEVFKEAVHLIKPIAAVKKLSMTLFMAPDLPGYAVGDEKRLLQTILNIAGNAVKFTKDGHVSLMASVAKTDSLRDWRPPE FYPMSSDGHFYLRVQVTDSGSGVSPQDIPSLFLKFAQPRSGSSRANSGNGLGLAICKRFVNLMGGHIWLESEGLNKGCKAIFIVKLGNASADHGTSNAVT SQQQQQTALRNHASAGHIEHHKPVFRDMDGSSGQRYQRSL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G40940		ERS1	ethylene response sensor 1 (.1...		Lus10010310 [exp]	0	1
AT5G25500			unknown protein		Lus10002031 [exp]	1.7	0.9162
AT1G53920		GLIP5	GDSL-motif lipase 5 (.1)		Lus10013185 [exp]	2.8	0.9087
AT2G40330		RCAR9, PYL6	regulatory components of ABA r...		Lus10029222 [exp]	3.0	0.9060
AT2G25490		FBL6, EBF1	EIN3-binding F box protein 1 (...		Lus10030102 [exp]	3.2	0.8886
AT5G43400			Uncharacterised conserved prot...		Lus10013399 [exp]	3.3	0.8590
AT3G21360			2-oxoglutarate (2OG) and Fe(II...		Lus10038282 [exp]	4.5	0.8919
AT1G55890			Tetratricopeptide repeat (TPR)...		Lus10020073 [exp]	5.5	0.8865
AT3G23150		ETR2	ethylene response 2, Signal tr...		Lus10041159 [exp]	6.9	0.8771
AT1G58330		ZW2	transcription factor-related (...		Lus10005041 [exp]	7.5	0.8777
AT2G25490		FBL6, EBF1	EIN3-binding F box protein 1 (...		Lus10002165 [exp]	7.7	0.8480

Compare expression of checked genes

Lus10010310 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.