Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G26260 664 / 0 AT3BETAHSD/D2 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 2 (.1.2) AT1G47290 586 / 0 AT3BETAHSD/D1 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 1 (.1.2) AT2G43420 388 / 1e-129 3-beta hydroxysteroid dehydrogenase/isomerase family protein (.1) AT2G33630 165 / 3e-45 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G33360 84 / 2e-17 FLDH farnesol dehydrogenase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) AT2G45400 64 / 8e-11 BEN1 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G78570 64 / 1e-10 ATRHM1, RHM1, ROL1 REPRESSOR OF LRX1 1, ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 1, rhamnose biosynthesis 1 (.1) AT1G53500 64 / 2e-10 ATRHM2, ATMUM4, RHM2, MUM4 ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 2, ARABIDOPSIS THALIANA MUCILAGE-MODIFIED 4, NAD-dependent epimerase/dehydratase family protein (.1) AT3G14790 61 / 1e-09 ATRHM3, RHM3 ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 3, rhamnose biosynthesis 3 (.1) AT1G09510 60 / 1e-09 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013413 [exp] 1003 / 0 AT2G26260 724 / 0.0 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 2 (.1.2) Lus10000358 [exp] 425 / 7e-149 AT1G47290 298 / 3e-101 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 1 (.1.2) Lus10013202 [exp] 178 / 5e-50 AT2G33630 714 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10030720 [exp] 175 / 1e-48 AT2G33630 720 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10021740 [exp] 94 / 1e-20 AT4G33360 551 / 0.0 farnesol dehydrogenase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Lus10004797 [exp] 82 / 3e-18 AT2G43420 110 / 1e-28 3-beta hydroxysteroid dehydrogenase/isomerase family protein (.1) Lus10020776 [exp] 66 / 6e-11 AT1G78570 964 / 0.0 REPRESSOR OF LRX1 1, ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 1, rhamnose biosynthesis 1 (.1) Lus10007355 [exp] 63 / 3e-10 AT1G78570 982 / 0.0 REPRESSOR OF LRX1 1, ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 1, rhamnose biosynthesis 1 (.1) Lus10010942 [exp] 62 / 8e-10 AT1G78570 1130 / 0.0 REPRESSOR OF LRX1 1, ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 1, rhamnose biosynthesis 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G218400 [exp] 751 / 0 AT2G26260 816 / 0.0 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 2 (.1.2) Potri.007G131200 [exp] 382 / 4e-128 AT2G43420 501 / 3e-174 3-beta hydroxysteroid dehydrogenase/isomerase family protein (.1) Potri.002G005100 [exp] 177 / 9e-50 AT2G33630 738 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.002G127400 [exp] 85 / 1e-17 AT4G33360 494 / 4e-177 farnesol dehydrogenase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Potri.002G127500 [exp] 79 / 7e-16 AT4G33360 531 / 0.0 farnesol dehydrogenase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Potri.006G272700 [exp] 63 / 2e-10 AT1G78570 1078 / 0.0 REPRESSOR OF LRX1 1, ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 1, rhamnose biosynthesis 1 (.1) Potri.011G103700 [exp] 63 / 3e-10 AT1G78570 1211 / 0.0 REPRESSOR OF LRX1 1, ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 1, rhamnose biosynthesis 1 (.1) Potri.001G383500 [exp] 62 / 4e-10 AT1G78570 1190 / 0.0 REPRESSOR OF LRX1 1, ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 1, rhamnose biosynthesis 1 (.1) Potri.009G057600 [exp] 59 / 2e-09 AT5G19440 474 / 7e-170 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.003G181400 [exp] 58 / 4e-09 AT1G15950 503 / 1e-180 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF01073 [flax] [poplar] 3Beta_HSD 3-beta hydroxysteroid dehydrogenase/isomerase family CL0484 [flax] [poplar] Peroxisome PF02453 [flax] [poplar] Reticulon Reticulon
Representative CDS sequence Show only first row Show all	>Lus10010311 pacid=23169559 polypeptide=Lus10010311 locus=Lus10010311.g ID=Lus10010311.BGIv1.0 annot-version=v1.0 ATGTCCGGGGACGATGGGGCGAGATTGTGCGTGGTCACCGGGGGCAGGGGCTTCGCCGCCCGGCATTTGATTGAAATGCTCATCCGATTGGACAAGTTTT TGGTTCGGATCGCTGATTTGGCTCCGGCAATCGAGCTCAGCCCCGAGGAAGTGGACGGAGACCTCGCCCGTGCTTTGGAATCCGGCCGAGCTACCTATGT TTCCATGGATCTCCGCAATAAACCTCAAGTAATCAAAGCTCTTGAAGGAGCTGAAGTCGTCTTCCACATGGCGGCTCCGCATTCTGGTATCAATAACTAC GAACTCCACTACTCAGTCAATGTCCAAGGAACGAAGAATGTAATTGATGCTTGCGTGGAGCTTGAAGTGAAGATCCTGATCTACACTAGCTCTGCTAGTG TAGTATTTGATGGGATTAATCCAATTCACAATGGAGACGAATCACTGCCTTATCCGCCTAAGCCTCTTGATTCATACTCTGCAACTAAAGCAGAAGCTGA AGCTGCCATCCTCAAGGCAAACGGTACCAATGGGCTTCTTACGTGCTCCTTACGTCCTAGTAGCATATTTGGCCCTGGCGATAAGTTATTTGTTCCTTCT CTTGCTGAGAATGGAAAGGCTGGGAAGTCCAAGTTCTTAATCGGTGATGGTAACAACGTCTATGACTTCACATATGTTGAAAACGTTGCACATGCTCACA TCTGCGCTGAACAAACTTTGTCATCAGCAAAGGAAATTGCCGATAAAGCTGCAGGGCAGGCGTATTTTATAACCAACATGGAACCTATGAAGTTCTGGGA GTTTGCTGGAAATGTTTGGGCAGGTCTTGGTTACGAGAGGCCGAGGGTAAAGGTTCCTGCTGCAATAGTTCTGCCAATAGCTTATGCAATTCAGTGGGCA TATAATATACTAGGGCCATATGGGATGAAGGTTCCGGTGCTGATTCCTTCGAGAGTTAGACTCCTTTCTGGCAACAGATCATTTAGTTGTGCAAAAGCTC ATGAGCGCCTTGGCTATACACCAATTGTATCTCTTGAGGAAGGTTTGAAAAGAACTCTCGAGTCATTTTCACATCTTAGTACTGACAATCAACCTAAAAG AGAAGGGCCGTCTAAGGCCTCACTATATCTTGGAAATGGAAAGGTTGCTGAGACACTACTTTGGAAGGACACTAGGAAGTCGCTAGCAGTGTTGCTAGTT CTCATTGGAATCTATTACAGTTTTGTTTTGTCGGACACTACCATTATTACTGCGACCTCAAAGCTTCTCTTGATGACATCAATCTTTCTATTCGTCCATG GCAGATTACCGGAGAAAATATTCGGGTATAATATTGAAAAGATCCGTCCATCGCATTTTTACTGCACAGAGAGGAAGTCTTACCACGTTGCCCATGTATT GGCTTCTATCTGGAATGCTAGCATTGATGTTTTAGAAACTCTTTGCAAAGGGAACGACTGGGTGCTCTTTGGGAAGGTACATACTAGTCTTTGTCGTGAT CTTCTTTGA
AA sequence Show only first row Show all	>Lus10010311 pacid=23169559 polypeptide=Lus10010311 locus=Lus10010311.g ID=Lus10010311.BGIv1.0 annot-version=v1.0 MSGDDGARLCVVTGGRGFAARHLIEMLIRLDKFLVRIADLAPAIELSPEEVDGDLARALESGRATYVSMDLRNKPQVIKALEGAEVVFHMAAPHSGINNY ELHYSVNVQGTKNVIDACVELEVKILIYTSSASVVFDGINPIHNGDESLPYPPKPLDSYSATKAEAEAAILKANGTNGLLTCSLRPSSIFGPGDKLFVPS LAENGKAGKSKFLIGDGNNVYDFTYVENVAHAHICAEQTLSSAKEIADKAAGQAYFITNMEPMKFWEFAGNVWAGLGYERPRVKVPAAIVLPIAYAIQWA YNILGPYGMKVPVLIPSRVRLLSGNRSFSCAKAHERLGYTPIVSLEEGLKRTLESFSHLSTDNQPKREGPSKASLYLGNGKVAETLLWKDTRKSLAVLLV LIGIYYSFVLSDTTIITATSKLLLMTSIFLFVHGRLPEKIFGYNIEKIRPSHFYCTERKSYHVAHVLASIWNASIDVLETLCKGNDWVLFGKVHTSLCRD LL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G26260		AT3BETAHSD/D2	3beta-hydroxysteroid-dehydroge...		Lus10010311 [exp]	0	1
AT1G48760		PAT4, DELTA-ADR	PROTEIN-AFFECTED TRAFFICKING 4...		Lus10016706 [exp]	4.2	0.8568
AT4G20720			dentin sialophosphoprotein-rel...		Lus10015137 [exp]	6.9	0.8471
AT1G18040		CDKD1;3, AT;CDC...	cyclin-dependent kinase D1;3 (...		Lus10017371 [exp]	10.0	0.8103
AT5G16210			HEAT repeat-containing protein...		Lus10009154 [exp]	19.5	0.8505
AT3G07140			GPI transamidase component Gpi...		Lus10025918 [exp]	23.8	0.8413
AT5G38690			Zinc-finger domain of monoamin...		Lus10033539 [exp]	28.8	0.8280
AT5G65950			unknown protein		Lus10041289 [exp]	30.7	0.8310
AT4G24530			O-fucosyltransferase family pr...		Lus10015890 [exp]	31.3	0.7902
AT5G05970		NEDD1	NEURAL PRECURSOR CELL EXPRESSE...		Lus10030162 [exp]	32.5	0.8341
AT3G50110		PTEN2B, ATPEN3	phosphatase and TENsin homolog...		Lus10010266 [exp]	35.7	0.8350

Compare expression of checked genes

Lus10010311 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.