Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G55340 254 / 9e-87 Protein of unknown function (DUF1639) (.1), Protein of unknown function (DUF1639) (.2) AT3G03880 176 / 6e-56 Protein of unknown function (DUF1639) (.1) AT4G20300 99 / 1e-24 Protein of unknown function (DUF1639) (.1), Protein of unknown function (DUF1639) (.2) AT3G60410 65 / 2e-12 Protein of unknown function (DUF1639) (.1), Protein of unknown function (DUF1639) (.2), Protein of unknown function (DUF1639) (.3) AT1G68340 56 / 1e-09 Protein of unknown function (DUF1639) (.1) AT1G25370 54 / 1e-08 Protein of unknown function (DUF1639) (.1) AT4G17440 47 / 2e-06 Protein of unknown function (DUF1639) (.1), Protein of unknown function (DUF1639) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013412 [exp] 289 / 2e-101 AT1G55340 165 / 1e-52 Protein of unknown function (DUF1639) (.1), Protein of unknown function (DUF1639) (.2) Lus10010650 [exp] 137 / 1e-41 AT1G55340 148 / 3e-46 Protein of unknown function (DUF1639) (.1), Protein of unknown function (DUF1639) (.2) Lus10013616 [exp] 102 / 1e-28 AT1G55340 111 / 1e-32 Protein of unknown function (DUF1639) (.1), Protein of unknown function (DUF1639) (.2) Lus10038379 [exp] 96 / 3e-24 AT4G20300 188 / 1e-58 Protein of unknown function (DUF1639) (.1), Protein of unknown function (DUF1639) (.2) Lus10036240 [exp] 95 / 5e-23 AT4G20300 217 / 3e-67 Protein of unknown function (DUF1639) (.1), Protein of unknown function (DUF1639) (.2) Lus10035144 [exp] 60 / 5e-11 AT1G25370 87 / 2e-20 Protein of unknown function (DUF1639) (.1) Lus10004378 [exp] 57 / 1e-09 AT4G17440 96 / 4e-23 Protein of unknown function (DUF1639) (.1), Protein of unknown function (DUF1639) (.2) Lus10010984 [exp] 52 / 3e-08 AT3G60410 89 / 3e-20 Protein of unknown function (DUF1639) (.1), Protein of unknown function (DUF1639) (.2), Protein of unknown function (DUF1639) (.3) Lus10040176 [exp] 43 / 6e-05 AT3G60410 76 / 1e-16 Protein of unknown function (DUF1639) (.1), Protein of unknown function (DUF1639) (.2), Protein of unknown function (DUF1639) (.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G004000 [exp] 286 / 1e-99 AT1G55340 268 / 4e-92 Protein of unknown function (DUF1639) (.1), Protein of unknown function (DUF1639) (.2) Potri.003G221000 [exp] 279 / 1e-96 AT1G55340 261 / 3e-89 Protein of unknown function (DUF1639) (.1), Protein of unknown function (DUF1639) (.2) Potri.019G035300 [exp] 230 / 6e-77 AT1G55340 232 / 9e-78 Protein of unknown function (DUF1639) (.1), Protein of unknown function (DUF1639) (.2) Potri.013G057600 [exp] 214 / 9e-71 AT1G55340 212 / 1e-69 Protein of unknown function (DUF1639) (.1), Protein of unknown function (DUF1639) (.2) Potri.018G059200 [exp] 124 / 8e-35 AT1G55340 133 / 3e-38 Protein of unknown function (DUF1639) (.1), Protein of unknown function (DUF1639) (.2) Potri.006G233100 [exp] 120 / 3e-33 AT1G55340 130 / 9e-37 Protein of unknown function (DUF1639) (.1), Protein of unknown function (DUF1639) (.2) Potri.003G157500 [exp] 104 / 1e-26 AT4G20300 201 / 2e-61 Protein of unknown function (DUF1639) (.1), Protein of unknown function (DUF1639) (.2) Potri.001G073400 [exp] 103 / 2e-26 AT4G20300 226 / 3e-71 Protein of unknown function (DUF1639) (.1), Protein of unknown function (DUF1639) (.2) Potri.010G122700 [exp] 65 / 1e-12 AT1G25370 110 / 1e-28 Protein of unknown function (DUF1639) (.1) Potri.008G122600 [exp] 59 / 3e-10 AT1G25370 100 / 6e-25 Protein of unknown function (DUF1639) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07797 [flax] [poplar] DUF1639 Protein of unknown function (DUF1639)
Representative CDS sequence Show only first row Show all	>Lus10010312 pacid=23169514 polypeptide=Lus10010312 locus=Lus10010312.g ID=Lus10010312.BGIv1.0 annot-version=v1.0 ATGGACAAGGAGAAAAAGAATTCAGAGAATGATTTTGTGTTACAATGGGGAACCAAAAAGAGGCTCAGATGCGTGAAATTGAAGAAAAATCAAAACTTGG CCAACAGTTCAAGACCAACTGATTCTTTCCCCAAGAAGAGGCTCACTTCTGCTGTCGTCTCTTCAAAGAAAGATTCTCCTTCTCGTTTTATTAAGAACTC CGATATGTTAGCAAGCAGGAGGAAAGTATCGTCACCGGAGAAAGAAGACCGGTACTACACAACTAGGGGATCAATGGGACTGGATGAAAGCAGTAAGCTT ATATTCGATAGTGTGAAGTTGGAAGACAAAGGTCATGTCTGGCCTAAATTGTTCATCTCGCTGTCAAATAAAGAAAAGGAGGAGGATTTCATGGCAATGA AAGGATGTAAACCATCACAGAGGCCTAAGAAAAGAGCCAAGTTGATCCAACGAACGATACTCTTGGTGAGCCCAGGGACATGGCTGTCAGATTTGACTCA AGAGAGATATGAAGTCAGGGAGAAGAAAGCTGCCAAAAGGAGACCTAGGGGGTTGAAGGCAATGGGCAGCAAGGAAAGTGATTCAGAATGA
AA sequence Show only first row Show all	>Lus10010312 pacid=23169514 polypeptide=Lus10010312 locus=Lus10010312.g ID=Lus10010312.BGIv1.0 annot-version=v1.0 MDKEKKNSENDFVLQWGTKKRLRCVKLKKNQNLANSSRPTDSFPKKRLTSAVVSSKKDSPSRFIKNSDMLASRRKVSSPEKEDRYYTTRGSMGLDESSKL IFDSVKLEDKGHVWPKLFISLSNKEKEEDFMAMKGCKPSQRPKKRAKLIQRTILLVSPGTWLSDLTQERYEVREKKAAKRRPRGLKAMGSKESDSE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G55340			Protein of unknown function (D...		Lus10010312 [exp]	0	1
AT4G21192			Cytochrome c oxidase biogenesi...		Lus10019246 [exp]	1.0	0.8930
					Lus10012945 [exp]	1.4	0.8921
AT5G07910			Leucine-rich repeat (LRR) fami...		Lus10021635 [exp]	2.4	0.8720
AT5G51960			unknown protein		Lus10036504 [exp]	2.8	0.8640
					Lus10041093 [exp]	3.9	0.8829
AT5G62980		FOLB2	Dihydroneopterin aldolase (.1)		Lus10021252 [exp]	4.0	0.8753
AT5G61970			signal recognition particle-re...		Lus10040614 [exp]	6.4	0.8277
AT4G02210			unknown protein		Lus10042596 [exp]	6.9	0.8620
					Lus10006003 [exp]	7.3	0.8632
					Lus10027225 [exp]	7.5	0.8394

Compare expression of checked genes

Lus10010312 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.