Plant FIBer expression Database

Lus10010314 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G55350 608 / 0 EMB80, ATDEK1, DEK1, EMB1275 EMBRYO DEFECTIVE 80, embryo defective 1275, DEFECTIVE KERNEL 1, calpain-type cysteine protease family (.1.2.3.4.5)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10013411
[exp]
526 / 3e-170 AT1G55350 3047 / 0.0 EMBRYO DEFECTIVE 80, embryo defective 1275, DEFECTIVE KERNEL 1, calpain-type cysteine protease family (.1.2.3.4.5)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G003900
[exp]
671 / 0 AT1G55350 3107 / 0.0 EMBRYO DEFECTIVE 80, embryo defective 1275, DEFECTIVE KERNEL 1, calpain-type cysteine protease family (.1.2.3.4.5)
Potri.003G221100
[exp]
656 / 0 AT1G55350 3113 / 0.0 EMBRYO DEFECTIVE 80, embryo defective 1275, DEFECTIVE KERNEL 1, calpain-type cysteine protease family (.1.2.3.4.5)
PFAM info
Representative CDS sequence
>Lus10010314 pacid=23169520 polypeptide=Lus10010314 locus=Lus10010314.g ID=Lus10010314.BGIv1.0 annot-version=v1.0
ATGGACGGGGATGAGCATGGGATTGTATTATCCTGTGCAATTTCTGGGACTCTTTTTGCTGTTTTGGGTTTGGCTTCATTTTCGATTCTGTGGGCAGTTA
ATTGGAGGCCTTGGAGGATCTACAGTTGGATCTTTGCCAGGAAGTGGCCACATATATTACAAGGACCTCAGCTGGGTGTAGTATGTCGTTTCCTATCTCT
ATCAGCATGGATAGTAGTGATATCTCCTGTTCTGGTTCTTATCATGTGGGGTTGCTGGCTAATTGTAATATTGGGCCGAGACATCATTGGCCTGGCTGTA
ATAATGGCCGGTACCGCTCTTTTACTAGCATTCTATTCGATCATGCTTTGGTGGAGAACACAATGGCAAAGTTCAAGGGCGGTTGCTATTCTTCTTCTTC
TAGCTGTTTTCTTGCTCTGTGGATATGAGTTATGTGCCGTCTATGTCACAGCTGGTAAAAGTGCATCCCGGCACTATTCTCCCTCTGGCTTCTTTTTTGG
CGTGACAGCTATTGCCTTGGCAATCAACATGCTATTCATCTGCAGAATGGTATTTAACGGGAATGGCCTAGATGTTGATGAATATGTACGAAGAGCATAC
AAGTTTGCGTATAGTGATTGTATTGAGATGGCTCCTATGCCTAGTGTGCCAGAACCACCTGATCCTAATGAACTATATCCAAGGCAATCAAGAAAGGCTT
CTCATCTTGGACTTCTCTACCTTGGATCACTTCTTGTTCTCTTTGTCTATTCCGTGTTGTATGGTCTGACAGCAAAGGAATCACGTTGGCTCGGAGCTAT
CACATCGGCTGCTGTTGTAGTTCTTGATTGGAATATGGGCGCTTGCTTGTATGGGTTTAAACTTCTTCGAAGTCGTGTTGCTGCTCTTTTTGTTGCTGGA
ATGTCTCGGGTTTTCCTCATCTGCTTTGGAGTGCATTATTGGTATTTGGGGCATTGCATCAGTTATGCTGTTGTTGCTACTGTGCTTTTGGGTGCTGCCG
TTTCTCGCCATCTCTCAGTTACGAACCCTTCAGCAGCTAGAAGAGATGCTTTACAGAGCACAGTGATCCGGTTGAGGGAGGGCTTCCGCAAGAAGGAGCA
GAATGCTTCATCCAGCTCATCTGAGGGTTGTGGCTCAAGTGTAAAACGCAGTGGTAGTGTTGAAACATGCCATCTTGGGAATGTTGTTGAATCCGCCAGT
CAATGTACAGCACAGAGCATTTCTGAGACCAATAACTGGCATAATGTTCTTCTTTGTCGAACTGCTAGTTGTCATGAGGGGATAAATAGTGATAAGAGCA
TGGAAAGCGGGAGGCCAAGTTTAGCATTTCGTAGCAGTTCATGCCGTCTAGCTGACAAATCACCGGCTTTTATATCTAAACTTGGCTCTTTCACTCCAAG
AGAGACTGAAGGACCCTAG
AA sequence
>Lus10010314 pacid=23169520 polypeptide=Lus10010314 locus=Lus10010314.g ID=Lus10010314.BGIv1.0 annot-version=v1.0
MDGDEHGIVLSCAISGTLFAVLGLASFSILWAVNWRPWRIYSWIFARKWPHILQGPQLGVVCRFLSLSAWIVVISPVLVLIMWGCWLIVILGRDIIGLAV
IMAGTALLLAFYSIMLWWRTQWQSSRAVAILLLLAVFLLCGYELCAVYVTAGKSASRHYSPSGFFFGVTAIALAINMLFICRMVFNGNGLDVDEYVRRAY
KFAYSDCIEMAPMPSVPEPPDPNELYPRQSRKASHLGLLYLGSLLVLFVYSVLYGLTAKESRWLGAITSAAVVVLDWNMGACLYGFKLLRSRVAALFVAG
MSRVFLICFGVHYWYLGHCISYAVVATVLLGAAVSRHLSVTNPSAARRDALQSTVIRLREGFRKKEQNASSSSSEGCGSSVKRSGSVETCHLGNVVESAS
QCTAQSISETNNWHNVLLCRTASCHEGINSDKSMESGRPSLAFRSSSCRLADKSPAFISKLGSFTPRETEGP

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G55350 EMB80, ATDEK1, ... EMBRYO DEFECTIVE 80, embryo de... Lus10010314
[exp]
0 1
AT3G12810 CHR13, SRCAP, P... PHOTOPERIOD-INDEPENDENT EARLY ... Lus10007174
[exp]
2.4 0.9661
AT4G03090 sequence-specific DNA binding;... Lus10024745
[exp]
3.5 0.9435
AT1G55350 EMB80, ATDEK1, ... EMBRYO DEFECTIVE 80, embryo de... Lus10013411
[exp]
3.9 0.9518
AT3G54460 SNF2 domain-containing protein... Lus10024159
[exp]
4.0 0.9596
AT1G20960 EMB1507 embryo defective 1507, U5 smal... Lus10025169
[exp]
6.2 0.9633
AT1G02080 transcription regulators (.1.2... Lus10042877
[exp]
9.9 0.9627
AT2G07675 Ribosomal protein S12/S23 fami... Lus10002330
[exp]
12.6 0.9457
AT4G28010 Tetratricopeptide repeat (TPR)... Lus10017684
[exp]
13.2 0.9260
AT4G31160 DCAF1 DDB1-CUL4 associated factor 1 ... Lus10006377
[exp]
14.7 0.9350
AT1G77320 MEI1 meiosis defective 1, transcrip... Lus10028674
[exp]
15.3 0.8684

Lus10010314 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.