Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G13490 794 / 0 ATKRS-2, OVA5 OVULE ABORTION 5, ARABIDOPSIS THALIANA LYSYL-TRNA SYNTHETASE 2, Lysyl-tRNA synthetase, class II (.1) AT3G11710 306 / 1e-95 ATKRS-1 lysyl-tRNA synthetase 1 (.1) AT4G26870 81 / 1e-15 Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1) AT4G31180 64 / 3e-10 Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1.2) AT4G33760 61 / 2e-09 tRNA synthetase class II (D, K and N) family protein (.1) AT3G30805 51 / 2e-07 Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013408 [exp] 1026 / 0 AT3G13490 881 / 0.0 OVULE ABORTION 5, ARABIDOPSIS THALIANA LYSYL-TRNA SYNTHETASE 2, Lysyl-tRNA synthetase, class II (.1) Lus10001440 [exp] 305 / 6e-95 AT3G11710 912 / 0.0 lysyl-tRNA synthetase 1 (.1) Lus10001625 [exp] 298 / 2e-92 AT3G11710 900 / 0.0 lysyl-tRNA synthetase 1 (.1) Lus10037243 [exp] 65 / 1e-10 AT4G33760 1033 / 0.0 tRNA synthetase class II (D, K and N) family protein (.1) Lus10018862 [exp] 62 / 8e-10 AT4G31180 667 / 0.0 Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1.2) Lus10028555 [exp] 60 / 3e-09 AT4G31180 606 / 0.0 Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1.2) Lus10035657 [exp] 51 / 2e-06 AT4G33760 688 / 0.0 tRNA synthetase class II (D, K and N) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G221600 [exp] 855 / 0 AT3G13490 897 / 0.0 OVULE ABORTION 5, ARABIDOPSIS THALIANA LYSYL-TRNA SYNTHETASE 2, Lysyl-tRNA synthetase, class II (.1) Potri.018G090600 [exp] 298 / 7e-93 AT3G11710 937 / 0.0 lysyl-tRNA synthetase 1 (.1) Potri.018G090400 [exp] 298 / 1e-92 AT3G11710 946 / 0.0 lysyl-tRNA synthetase 1 (.1) Potri.006G166000 [exp] 294 / 5e-91 AT3G11710 936 / 0.0 lysyl-tRNA synthetase 1 (.1) Potri.009G084300 [exp] 69 / 7e-12 AT4G33760 1004 / 0.0 tRNA synthetase class II (D, K and N) family protein (.1) Potri.001G289001 [exp] 66 / 4e-11 AT4G33760 998 / 0.0 tRNA synthetase class II (D, K and N) family protein (.1) Potri.006G085400 [exp] 60 / 3e-09 AT4G31180 709 / 0.0 Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0040 [flax] [poplar] tRNA_synt_II PF00152 [flax] [poplar] tRNA-synt_2 tRNA synthetases class II (D, K and N) CL0021 [flax] [poplar] OB PF01336 [flax] [poplar] tRNA_anti-codon OB-fold nucleic acid binding domain
Representative CDS sequence Show only first row Show all	>Lus10010317 pacid=23169511 polypeptide=Lus10010317 locus=Lus10010317.g ID=Lus10010317.BGIv1.0 annot-version=v1.0 ATGGAGGCACTGAAGGTGCTCCGTCTATCCGTCAGACCATTCCATCGTCACCTTCTCCGTTTCAATTCTTCCTTCCCCTCTCCAACTTCCTATTCTACTT TCGTGCTCCGCTGTTGTTCCCCTGCCGCCGCCGGACAAGGCGTCGCCTCCCCCAAGCTTGCCTCTCGAAACCGCCGTTCCTCCTCCACCAAGGCCCCTTC TTCCTCCTCCTCCACTTCCGACCGTGACGCTATTCGTGCTCTCAGGTTGAAAAAGGTTGAGGAACTGAGGAGCAAAGGTTATGAGCCATATGCATACAAT TGGGATCGGACTCACACTGCCAATCAACTGCAGGAGCTATACAAAGATTTGGGAAATGGTGAAGAATCAACAAGTGAGAGTGATCATGTATCCATTGCAG GGAGGATTGTTGCCCGCAGGGCTTTTGGAAAGCTTGCTTTTTTGACACTTAGAGATGACTCTGGCACAATTCAGCTTTACTGTGAGAAAGAGAAGCTTCT GGATGACCAATTTAACCAGCTGAAGAATTATGTTGATATTGGTGACATATTGGGAGCTAAGGGTTCGATGAAGCGTACAGACAAAGGAGAACTGTCTGTT TGTGTAAAATCTTCCACAATTCTTACCAAGTCTTTCCTTCCACTTCCGGTTATTTGCAGGAGAACTGTCTGTTTGTGTAAAATCTTTCACAATTCTTACC AAGTCTCTCCTTCCACTTCCGGACAAGTATCACGGTTTAACAGATGTCGACAAGCGATATCGCCAGCGGAAACCATTGATATGATCTTATTGCTGATGCT TACATACGAATACGTTGATATGATAGCAAATCCCGAAGTAGTCGATGTATTTCGCAAAAGAGCAAAGATCGTTTCAGAAATTCGCAAGACCGTGGAACAC TTAGGTTTTATTGAAGTTGATACACCAGTTCTCCAGGGAGCAGCTGGTGGGGCTGAAGCTAGACCATTCGTGACTTATCACAATTCACTCGGAAGAGATC TCTATCTTAGGATTGCAACTGAGCTGCATTTAAAGAGAATGTTGGTGGGTGGTATTGAGAAGGTATATGAAATAGGCAGAATCTTCAGAAATGAAGGACT TTCACCACGTCATAATCCCGAGTTTACGACTATCGAGATGTATGAAGCTTATTCGGATTACGAAAGCATGATGAACATGACAGAGGAGATTGTTACAAAC TGTGCTTTGGCTGTTCATGGAAAGCTTACAATTGACTACCAGGGAGCAGAGATTTGCTTAGAGAGGCCTTGGAGGAAGGAAAGCATGCACAATCTTGTAA AAGAAGCCACTGGTATAGCTTTCAATCAATTAAGCAATGATCTAACCGTTGCTAAAGAGGTATGTTTGAAGTCGCTTGGACCTGAGCTTGAAAGTAAAGA CAGATCCGCTATTGAGGCATGTGCTTCTGTAGGTCACCTTCTTAATGAGGTTTTTGAAATTTTTGTCGAGTCCAAACTCATGCAACCCACATTCGTCTTG GACTATCCCATTGAGATATCTCCCTTCGCAAAACCACACAGAAGGCATGCAGGTTTGACGGAGAGGTTTGAACTCTTTGTTTGCGGTCGTGAATTGGCCA ACGCGTTTTCAGAATTGACTGATCCAATGGATCAGAGGGTGCGATTGGAGGATCAAGTGAGGCAGCACAATGCGAAAAAAGCAGCATCTGGTTCAAGTTC TACCGAAGGCAGCAGCAGTAAGAAAGACGAGGACGATTCATATGAAGTAACACTTGATGACGACTTTCTAACAGCGATGGAATACGGAATGCCTCCTGCC TCTGGATTGGGAATCGGAATCGATAGGCTGGTGATGCTGCTGACAAATTCTGCTAGTATACGCGAAGTCATTGCGTTTCCAGTGCTCAAGATCCAGCAGT AA
AA sequence Show only first row Show all	>Lus10010317 pacid=23169511 polypeptide=Lus10010317 locus=Lus10010317.g ID=Lus10010317.BGIv1.0 annot-version=v1.0 MEALKVLRLSVRPFHRHLLRFNSSFPSPTSYSTFVLRCCSPAAAGQGVASPKLASRNRRSSSTKAPSSSSSTSDRDAIRALRLKKVEELRSKGYEPYAYN WDRTHTANQLQELYKDLGNGEESTSESDHVSIAGRIVARRAFGKLAFLTLRDDSGTIQLYCEKEKLLDDQFNQLKNYVDIGDILGAKGSMKRTDKGELSV CVKSSTILTKSFLPLPVICRRTVCLCKIFHNSYQVSPSTSGQVSRFNRCRQAISPAETIDMILLLMLTYEYVDMIANPEVVDVFRKRAKIVSEIRKTVEH LGFIEVDTPVLQGAAGGAEARPFVTYHNSLGRDLYLRIATELHLKRMLVGGIEKVYEIGRIFRNEGLSPRHNPEFTTIEMYEAYSDYESMMNMTEEIVTN CALAVHGKLTIDYQGAEICLERPWRKESMHNLVKEATGIAFNQLSNDLTVAKEVCLKSLGPELESKDRSAIEACASVGHLLNEVFEIFVESKLMQPTFVL DYPIEISPFAKPHRRHAGLTERFELFVCGRELANAFSELTDPMDQRVRLEDQVRQHNAKKAASGSSSTEGSSSKKDEDDSYEVTLDDDFLTAMEYGMPPA SGLGIGIDRLVMLLTNSASIREVIAFPVLKIQQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G13490		ATKRS-2, OVA5	OVULE ABORTION 5, ARABIDOPSIS ...		Lus10010317 [exp]	0	1
AT3G03630		CS26	cysteine synthase 26 (.1)		Lus10020342 [exp]	3.3	0.9398
AT5G19840			2-oxoglutarate (2OG) and Fe(II...		Lus10014697 [exp]	4.5	0.9011
AT1G06950		ATTIC110, TIC11...	ARABIDOPSIS THALIANA TRANSLOCO...		Lus10042231 [exp]	4.7	0.9387
AT3G21300			RNA methyltransferase family p...		Lus10009743 [exp]	4.9	0.9182
AT4G18130		PHYE	phytochrome E (.1)		Lus10004592 [exp]	6.3	0.9267
AT1G68890			magnesium ion binding;thiamin ...		Lus10030915 [exp]	6.9	0.9337
AT3G03710		PDE326, PNP, RI...	resistant to inhibition with F...		Lus10001332 [exp]	8.9	0.9254
AT3G12080		EMB2738	embryo defective 2738, GTP-bin...		Lus10027371 [exp]	11.2	0.9250
AT1G23360		MENG	S-adenosyl-L-methionine-depend...		Lus10013038 [exp]	11.6	0.8954
AT3G04340		EMB2458	embryo defective 2458, FtsH ex...		Lus10010356 [exp]	12.0	0.9109

Compare expression of checked genes

Lus10010317 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.