Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G56460 592 / 0 Protein kinase superfamily protein (.1) AT5G01020 412 / 2e-142 Protein kinase superfamily protein (.1) AT2G26290 372 / 1e-126 ARSK1 root-specific kinase 1 (.1) AT2G07180 372 / 2e-126 Protein kinase superfamily protein (.1.2) AT2G05940 370 / 3e-125 RIPK RPM1-induced protein kinase, Protein kinase superfamily protein (.1) AT3G28690 358 / 1e-120 Protein kinase superfamily protein (.1.2.3) AT1G61590 355 / 1e-119 Protein kinase superfamily protein (.1) AT5G15080 356 / 3e-119 Protein kinase superfamily protein (.1) AT5G35580 353 / 6e-118 Protein kinase superfamily protein (.1) AT3G01300 350 / 5e-117 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013406 [exp] 759 / 0 AT5G56460 630 / 0.0 Protein kinase superfamily protein (.1) Lus10036762 [exp] 406 / 6e-139 AT5G01020 672 / 0.0 Protein kinase superfamily protein (.1) Lus10030668 [exp] 378 / 1e-127 AT5G15080 723 / 0.0 Protein kinase superfamily protein (.1) Lus10005255 [exp] 377 / 2e-127 AT5G15080 720 / 0.0 Protein kinase superfamily protein (.1) Lus10034897 [exp] 377 / 3e-127 AT2G05940 636 / 0.0 RPM1-induced protein kinase, Protein kinase superfamily protein (.1) Lus10006643 [exp] 374 / 8e-127 AT5G15080 495 / 2e-173 Protein kinase superfamily protein (.1) Lus10038087 [exp] 372 / 6e-126 AT5G15080 499 / 6e-175 Protein kinase superfamily protein (.1) Lus10033429 [exp] 373 / 2e-125 AT2G05940 636 / 0.0 RPM1-induced protein kinase, Protein kinase superfamily protein (.1) Lus10040588 [exp] 365 / 3e-123 AT2G07180 582 / 0.0 Protein kinase superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G222600 [exp] 597 / 0 AT5G56460 585 / 0.0 Protein kinase superfamily protein (.1) Potri.001G002300 [exp] 586 / 0 AT5G56460 608 / 0.0 Protein kinase superfamily protein (.1) Potri.006G113600 [exp] 425 / 3e-147 AT5G01020 664 / 0.0 Protein kinase superfamily protein (.1) Potri.016G143200 [exp] 421 / 1e-145 AT5G01020 655 / 0.0 Protein kinase superfamily protein (.1) Potri.006G141500 [exp] 386 / 2e-131 AT2G05940 638 / 0.0 RPM1-induced protein kinase, Protein kinase superfamily protein (.1) Potri.004G129000 [exp] 380 / 6e-129 AT5G15080 659 / 0.0 Protein kinase superfamily protein (.1) Potri.010G033800 [exp] 379 / 3e-128 AT5G15080 669 / 0.0 Protein kinase superfamily protein (.1) Potri.008G194700 [exp] 378 / 6e-128 AT5G15080 671 / 0.0 Protein kinase superfamily protein (.1) Potri.006G219300 [exp] 376 / 9e-128 AT2G05940 536 / 0.0 RPM1-induced protein kinase, Protein kinase superfamily protein (.1) Potri.001G128500 [exp] 369 / 2e-125 AT1G61590 622 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10010319 pacid=23169542 polypeptide=Lus10010319 locus=Lus10010319.g ID=Lus10010319.BGIv1.0 annot-version=v1.0 ATGGGGAATTGCTGGTACAGAGGGCAGCCTTCTGTATACAGAGTCTCTTCAAATGCAAAACCAGAATCTCCAAAAGAGCAATGCACATCAGATAAACCAA GGAAGGACATGCGGAAACTGCCTTCCAATCCTGAAGAAGTAGAAGACTTTCGCCGCGATTCAGCAGCCAATCCTTTAGTTGCATTCACCTTCGAGGAGCT GAAGAAGATGACTGGGAATTTCAGGCAAGACAAGGTGCTTGGGGGAGGAGGCTTTGGGAATGTTTATAAGGGTCTCATAACTGATGACCTTAGAGATGGC ACCCTGCAGCCTGTTCAAGTTGCTGTCAAAGTTCATGATGGCCACAATAGTTACCAAGGCCATCGAGAATGGCTGGTAAAGTTGACATCTTGTATGCTAA GCTTTTGTTTCACCATTGCTGATACCGATACCAAGAACACGGTAGATAATCTGATTGAGAATTTTGGTGGCGAATTTCAGGCAGAGGTCATATTCCTGGG GCAGCTTTCACACCCAAATCTGGTGAAGTTGATTGGATATTGCTGCGAGGACGAGCACCGAGTCCTGATATACGAGTATATGTGTCGGGGCAGTGTGGAG AGCAATCTGTTTTCAAGAGTAGTACTTCCACTTTCGTGGAAGATCAGAATGAAAATTGCATTTGGTGCAGCAAAAGGACTTGCCTTTCTGCATGAAGCTG AAAAGCCTGTCATTTACCGCGACTTCAAAACCTCCAACATTTTATTAGACGGGGACTACAATGCTAAGCTCTCAGACTTCGGCCTTGCTAAGGATGGACC TATGGGGGACAAAACTCATGTTTCCACCCGCATAATGGGCACGTACGGATATGCAGCACCGGAATATATAATGACAGGCCATCTTACACCAAGAAGTGAT GTATACAGCTTCGGCGTTGTTCTTCTTGAACTTCTGACGGGAAGAAAATCTCTAGACAAATCCAAACCCACAAGAGAGCAAAACCTTATAGATTGGGCGC TTCCGCTGCTGAAAGAGAAGAAGAAATTGCTTAATATGGTTGACCCAAGATTAGAAGGAGACTATCCTGTTAAAGCTATTCACAAAGCAGCAATGCTAGC ATATCATTGCTTGAATAAAAATCCCAAAGCCAGACCTTTAATGCGAGATATAGTTGATTCCCTGGAGCCTTTGCAGGTAGCTGAATTGCTTCCCCACGAA AAAGGCATGGTCACTGTGATTAGTGTCATACCTGAAGGTACTGAGACGAAAAGGAAAGAGGACGCAAAATAG
AA sequence Show only first row Show all	>Lus10010319 pacid=23169542 polypeptide=Lus10010319 locus=Lus10010319.g ID=Lus10010319.BGIv1.0 annot-version=v1.0 MGNCWYRGQPSVYRVSSNAKPESPKEQCTSDKPRKDMRKLPSNPEEVEDFRRDSAANPLVAFTFEELKKMTGNFRQDKVLGGGGFGNVYKGLITDDLRDG TLQPVQVAVKVHDGHNSYQGHREWLVKLTSCMLSFCFTIADTDTKNTVDNLIENFGGEFQAEVIFLGQLSHPNLVKLIGYCCEDEHRVLIYEYMCRGSVE SNLFSRVVLPLSWKIRMKIAFGAAKGLAFLHEAEKPVIYRDFKTSNILLDGDYNAKLSDFGLAKDGPMGDKTHVSTRIMGTYGYAAPEYIMTGHLTPRSD VYSFGVVLLELLTGRKSLDKSKPTREQNLIDWALPLLKEKKKLLNMVDPRLEGDYPVKAIHKAAMLAYHCLNKNPKARPLMRDIVDSLEPLQVAELLPHE KGMVTVISVIPEGTETKRKEDAK

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G56460			Protein kinase superfamily pro...		Lus10010319 [exp]	0	1
AT4G13830		J20	DNAJ-like 20 (.1.2)		Lus10000690 [exp]	3.2	0.8252
AT5G15630		IRX6, COBL4	IRREGULAR XYLEM 6, COBRA-LIKE4...		Lus10031972 [exp]	3.7	0.8794
AT4G36870	HD	BLH2, SAW1	SAWTOOTH 1, BEL1-like homeodom...		Lus10016790 [exp]	5.8	0.8698
AT5G60490		FLA12	FASCICLIN-like arabinogalactan...		Lus10002985 [exp]	6.7	0.8602
AT5G28840		GME	"GDP-D-mannose 3',5'-epimerase...		Lus10020247 [exp]	7.2	0.8459
AT5G15630		IRX6, COBL4	IRREGULAR XYLEM 6, COBRA-LIKE4...		Lus10035131 [exp]	14.0	0.8438
AT5G15740		RRT1	O-fucosyltransferase family pr...		Lus10013503 [exp]	15.5	0.8197
AT5G55560			Protein kinase superfamily pro...		Lus10016594 [exp]	17.1	0.8355
AT1G67850			Protein of unknown function (D...		Lus10011414 [exp]	17.3	0.7874
AT1G07420		SMO2-1, ATSMO1,...	Arabidopsis thaliana sterol 4-...		Lus10001556 [exp]	18.7	0.7570

Compare expression of checked genes

Lus10010319 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.