Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G34400 659 / 0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT2G29760 427 / 7e-141 OTP81 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G08820 423 / 4e-140 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G22410 419 / 8e-139 SLO1 SLOW GROWTH 1 (.1) AT1G08070 420 / 2e-138 EMB3102, OTP82 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G12770 400 / 3e-131 MEF22 mitochondrial editing factor 22 (.1) AT4G14820 393 / 3e-128 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G13600 388 / 2e-126 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G15930 385 / 1e-125 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G18750 385 / 2e-123 DOT4 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029436 [exp] 452 / 2e-151 AT3G08820 828 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10040680 [exp] 428 / 2e-141 AT2G29760 926 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10018223 [exp] 419 / 5e-138 AT2G29760 931 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10033026 [exp] 419 / 1e-137 AT1G08070 921 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10033858 [exp] 413 / 3e-137 AT1G08070 422 / 4e-139 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10004052 [exp] 400 / 6e-132 AT1G31430 684 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10030053 [exp] 403 / 8e-132 AT1G08070 884 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10002288 [exp] 393 / 2e-129 AT1G31430 689 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10009269 [exp] 393 / 6e-129 AT2G13600 874 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G108000 [exp] 840 / 0 AT2G34400 640 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.018G145514 [exp] 602 / 0 AT2G34400 472 / 4e-162 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.018G145510 [exp] 595 / 0 AT2G34400 462 / 3e-158 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.016G128900 [exp] 476 / 5e-161 AT3G08820 812 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G105700 [exp] 469 / 3e-158 AT3G08820 810 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.018G040100 [exp] 455 / 5e-152 AT1G08070 974 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G103600 [exp] 450 / 3e-151 AT1G08070 477 / 7e-160 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G031600 [exp] 450 / 6e-150 AT3G15930 784 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.018G071800 [exp] 444 / 6e-148 AT1G08070 606 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G019500 [exp] 436 / 3e-145 AT2G22410 791 / 0.0 SLOW GROWTH 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10010320 pacid=23169544 polypeptide=Lus10010320 locus=Lus10010320.g ID=Lus10010320.BGIv1.0 annot-version=v1.0 ATGAAGCTTCTCCGTCGCCGGCCAATCTCCCGCCATTTCTGCTTCAACCGCTATGATTACCAGTCCCTTTCTCGAAAACTCTTCTCCCTCTTAAAGGCGT GCGCGTTTCTGAAGCCACTCAAACAGATCCACGCCCAAATGCTCGTAAGCTCCGCTCATCACCCGAACTTTTTTCTCCCAAAACTCATTCTTCTGAAGGA CTTCGACTATGCTTTACTCTTTTTCACCAATCTTCACCAGCCCAATGATTACGCCCTCAACGTCATGATCCGTGGCCTTACCACTACCTGGCACAGGTAC TCTTTGGCTCTTCAGTTCTATTACCAGATGAAGGTTTCTGGTCAAGTCCCAGATAATTTCACTTACCCTTTCGTCTTCATTTCCTGTGCCAACCTTCTAG CTCTGGACTGTGGGCGATCCGCTCACTCTATGGTTTTTAAGTCTGGGCTGGACTCTGATGATCATGTGGCTCACTCTATGATTACCATGTATGCAAAGTG TGGTCAATTGGATTGCTCCCGGAAGGTGTTCGACGAAATTCCTCAAAGAGATTTGGTATCGTGGAATTCCATGATTTCTGGGTATGCGCAGATGGGGTTT GCGAGGAAGGCGGTGAGGTTGTTTTTGGATATGAAAGACCTGGGGATTTACCCTAATGAGATGACGTTGGTAAGTGTTCTTGGGGCTTGTGGGGATTTGG GGAATCTGGATATGGGAAAGTCGGTGGAGGAGTTTGTTATTGATAGGAAGATGGTGTTGAACTCATATATTGGCTCTGCTCTGATTAACATGTATGGGAA GTGTGGGGATTTGGTAGCTGCAAGGAAGGTTTTTGATTCAATGCTAAAGAAAGACGTTGTTGCTTGGAATGCTATGATCACTGGGTATGCCCAGAATGGA GAATCGGATAAAACAATCATATTGTTTAATGCAATGAGAGAGACGAGTATCAGTCCGAACAAAATCACAATGGTTGGAGTTCTTTCTGCCTGTGCCTCCA TAGGGGCTCTTGAATTAGGAAAATGGATTGAGACTTACGCTTCAGAAAGAAACTTGCAGCACGATATTTATGTTGCCAGCGCACTGATTGATATGTATGC CAAGTGCGGGAATTTGGACGATTCAGTAAGGGTGTTCGAAAGTATGCCTTATAAAAATGAGGTGTCTTGGAATTCCATGATTTCTGCTCTTGCTTTCAAT GGCCGACCTCAAGAGGCCTTGTCTTTGTTCTGGCGCATGACAAGGGAGACTAGTGCTCCCATTCCAGATGAGATCACGTTTGTGGCAGTGCTTTCTGCTT GTGTACATGGTGGATTGATTGATGAAGGACGCCAATTGTTTGAGATGATGAAATCTTCATTTGGAGTTGTTCCTACGATTGAGCACTTTTCCTGTATGGT TGATCTGTTGGCACGTGCTGGACTTCTGCATGAAGCCTGGGAGTTTATAGAAAAGATGCCTGGAAAGCCAGACGAAATTGTCCTGGGAGCATTGCTTGCT GCTTGTCGGAAGAGAAAGAATGAAGATGTCAGTGAACGGGTGATTAAACTACTTCTAGAGGTGGAGCCATCAAATTCTGGGAACTACGTCATTTCATCTA AGATATATGCTGATATGAGAAGATGGGAAGAGTCGGCAAATGTAAGAGTCTTGATGAGAGAAAGGGGTGTTACTAAGACTCCAGGTTGCAGTTGGGTTGA GCTGGGATCTCAAGTTCATGAATTTCATGCGGGTGATAGTTTACCAGATCAATCCGTACATATGTACCAACTGCTCAATGAGCAGATGAGGAAGGAAGGT TACGTTCCAAAGCCTGATTCTTCTTAG
AA sequence Show only first row Show all	>Lus10010320 pacid=23169544 polypeptide=Lus10010320 locus=Lus10010320.g ID=Lus10010320.BGIv1.0 annot-version=v1.0 MKLLRRRPISRHFCFNRYDYQSLSRKLFSLLKACAFLKPLKQIHAQMLVSSAHHPNFFLPKLILLKDFDYALLFFTNLHQPNDYALNVMIRGLTTTWHRY SLALQFYYQMKVSGQVPDNFTYPFVFISCANLLALDCGRSAHSMVFKSGLDSDDHVAHSMITMYAKCGQLDCSRKVFDEIPQRDLVSWNSMISGYAQMGF ARKAVRLFLDMKDLGIYPNEMTLVSVLGACGDLGNLDMGKSVEEFVIDRKMVLNSYIGSALINMYGKCGDLVAARKVFDSMLKKDVVAWNAMITGYAQNG ESDKTIILFNAMRETSISPNKITMVGVLSACASIGALELGKWIETYASERNLQHDIYVASALIDMYAKCGNLDDSVRVFESMPYKNEVSWNSMISALAFN GRPQEALSLFWRMTRETSAPIPDEITFVAVLSACVHGGLIDEGRQLFEMMKSSFGVVPTIEHFSCMVDLLARAGLLHEAWEFIEKMPGKPDEIVLGALLA ACRKRKNEDVSERVIKLLLEVEPSNSGNYVISSKIYADMRRWEESANVRVLMRERGVTKTPGCSWVELGSQVHEFHAGDSLPDQSVHMYQLLNEQMRKEG YVPKPDSS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G34400			Pentatricopeptide repeat (PPR-...		Lus10010320 [exp]	0	1
AT3G10530			Transducin/WD40 repeat-like su...		Lus10024656 [exp]	1.7	0.8462
AT2G47830			Cation efflux family protein (...		Lus10000033 [exp]	4.2	0.7942
AT1G54130		AT-RSH3, RSH3, ...	RELA/SPOT homolog 3 (.1)		Lus10008755 [exp]	4.9	0.7938
AT5G66050			Wound-responsive family protei...		Lus10041852 [exp]	7.9	0.7744
AT1G63690		ATSPPL2	SIGNAL PEPTIDE PEPTIDASE-LIKE ...		Lus10035484 [exp]	11.2	0.7321
AT4G13750		EMB2597, NOV	NO VEIN, EMBRYO DEFECTIVE 2597...		Lus10022572 [exp]	12.8	0.8050
AT2G21090			Pentatricopeptide repeat (PPR-...		Lus10019213 [exp]	13.6	0.7849
AT3G48010		ATCNGC16	cyclic nucleotide-gated channe...		Lus10042132 [exp]	13.6	0.7866
AT1G67120			ATPases;nucleotide binding;ATP...		Lus10037616 [exp]	13.9	0.7757
AT5G15280			Pentatricopeptide repeat (PPR)...		Lus10015373 [exp]	14.1	0.7268

Compare expression of checked genes

Lus10010320 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.