Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G55480 400 / 2e-140 ZKT protein containing PDZ domain, a K-box domain, and a TPR region (.1) AT1G02910 59 / 2e-09 LPA1 LOW PSII ACCUMULATION1, tetratricopeptide repeat (TPR)-containing protein (.1) AT5G17170 55 / 2e-08 ENH1 enhancer of sos3-1, rubredoxin family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013403 [exp] 578 / 0 AT1G55480 395 / 3e-138 protein containing PDZ domain, a K-box domain, and a TPR region (.1) Lus10010280 [exp] 57 / 7e-09 AT1G02910 610 / 0.0 LOW PSII ACCUMULATION1, tetratricopeptide repeat (TPR)-containing protein (.1) Lus10036345 [exp] 57 / 7e-09 AT1G02910 620 / 0.0 LOW PSII ACCUMULATION1, tetratricopeptide repeat (TPR)-containing protein (.1) Lus10003157 [exp] 53 / 8e-08 AT5G17170 377 / 3e-133 enhancer of sos3-1, rubredoxin family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G222200 [exp] 425 / 5e-150 AT1G55480 405 / 4e-142 protein containing PDZ domain, a K-box domain, and a TPR region (.1) Potri.001G002700 [exp] 319 / 6e-108 AT1G55480 303 / 1e-101 protein containing PDZ domain, a K-box domain, and a TPR region (.1) Potri.002G206300 [exp] 62 / 1e-10 AT1G02910 615 / 0.0 LOW PSII ACCUMULATION1, tetratricopeptide repeat (TPR)-containing protein (.1) Potri.019G042600 [exp] 53 / 7e-08 AT5G17170 301 / 3e-103 enhancer of sos3-1, rubredoxin family protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10010322 pacid=23169543 polypeptide=Lus10010322 locus=Lus10010322.g ID=Lus10010322.BGIv1.0 annot-version=v1.0 ATGTCTTTAGCCGCTGCCGCTGCTACTTCTTCTTCCACTGCAACAAGTTGCAGCAGCAATGGCGGCCGCCGGGGAAGAAGCTACCCACCGCATCCTCCTC TCCTCCAAACGCCAATCGCAAGAATCAGTTTCGGGGCAAGAAGAACCCAAAACCCACCACTTGTCGGTTTCCAAGAGAAGAAGAAGCACTTGGTGGTGAA AGCGACGCAGAAGGAGCAAGCATCGGAGGAAGAAGATGAAGGTAAGAAGTATGAAGAGTACGAGGTGGAGCTTGATCAGCCGTACGGCCTCAAGTTTGCC AAGGGGAGAGATGGTGGGACTTACATTGACGCAATTGCCCCCGGTGGCGCCGCTGATAAGACCGGCCTCTTCACTGTCGGTGACAGAGTCGTCGCTACCA GTGCGGTGTTTGGCACGGAGATGTGGCCGGCGGCGGAGTACGGGAGGACCATGTACACCATCCGCCAGCGGATTGGTCCTTTGCTCATGCGTATGCAGAA GCGATACGGGAGCACGGAATACTCTGGTGAATTAACAGAGAAGGAGATTATAAGGGCTGAAAGGAACTCTGGTGTTGTTAGTAACAAAGTCAGGGAGATT CAACTCCAAAATTACATGCGGAAAATGGAACAGAAGCAGCAACGAGCAGAGGATCTTCGTCTAGGTCTCCAGCTCTACAAGGAGGGCAAATATGAGGAGT CGTTGGAGAGATTCGAGTCGGTGTTGGGGTCGAAACCTGAACTGGATGAAGCTGCTGTGGCAAGTTACAACGTTGCCTGCTGCTACTCGAAGCTTGACCA GGTGCAAGCTGGGTTATCTGCGCTCGAGGATGCTATGAAATCTGGATTCGAGGATTTCAAGAGAATCAGAACAGATCCGGACCTAACTAATGTGAGGGCA TCGCCTGGTTTTCAGCCTCTGATCAAGAGATTTGATGAATCCTTGATCAATGAGGATGCCATCAATGCCATCAAGTCCCTGTTCGGATTCAAAAGCAAAT AG
AA sequence Show only first row Show all	>Lus10010322 pacid=23169543 polypeptide=Lus10010322 locus=Lus10010322.g ID=Lus10010322.BGIv1.0 annot-version=v1.0 MSLAAAAATSSSTATSCSSNGGRRGRSYPPHPPLLQTPIARISFGARRTQNPPLVGFQEKKKHLVVKATQKEQASEEEDEGKKYEEYEVELDQPYGLKFA KGRDGGTYIDAIAPGGAADKTGLFTVGDRVVATSAVFGTEMWPAAEYGRTMYTIRQRIGPLLMRMQKRYGSTEYSGELTEKEIIRAERNSGVVSNKVREI QLQNYMRKMEQKQQRAEDLRLGLQLYKEGKYEESLERFESVLGSKPELDEAAVASYNVACCYSKLDQVQAGLSALEDAMKSGFEDFKRIRTDPDLTNVRA SPGFQPLIKRFDESLINEDAINAIKSLFGFKSK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G55480		ZKT	protein containing PDZ domain,...		Lus10010322 [exp]	0	1
AT1G55480		ZKT	protein containing PDZ domain,...		Lus10013403 [exp]	1.0	0.9781
AT3G54050		HCEF1	high cyclic electron flow 1 (....		Lus10017195 [exp]	2.4	0.9716
AT5G07020			proline-rich family protein (....		Lus10024125 [exp]	2.4	0.9762
AT4G38970		FBA2	fructose-bisphosphate aldolase...		Lus10035473 [exp]	4.0	0.9608
AT1G66840		PMI2, WEB2	WEAK CHLOROPLAST MOVEMENT UNDE...		Lus10017614 [exp]	4.5	0.9404
AT1G42970		GAPB	glyceraldehyde-3-phosphate deh...		Lus10016033 [exp]	4.9	0.9573
AT5G07020			proline-rich family protein (....		Lus10005388 [exp]	5.0	0.9603
AT4G38970		FBA2	fructose-bisphosphate aldolase...		Lus10031088 [exp]	5.7	0.9494
AT5G17670			alpha/beta-Hydrolases superfam...		Lus10020326 [exp]	6.3	0.9548
AT5G01920		STN8	State transition 8, Protein ki...		Lus10022730 [exp]	6.5	0.9569

Compare expression of checked genes

Lus10010322 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.