Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G55510 590 / 0 BCDH BETA1, BCDHBETA1 branched-chain alpha-keto acid decarboxylase E1 beta subunit (.1) AT3G13450 586 / 0 DIN4 DARK INDUCIBLE 4, Transketolase family protein (.1) AT5G50850 202 / 1e-61 MAB1 MACCI-BOU, Transketolase family protein (.1) AT1G30120 188 / 5e-56 PDH-E1 BETA, PDH-E1BETA pyruvate dehydrogenase E1 beta (.1) AT2G34590 182 / 8e-54 Transketolase family protein (.1) AT4G15560 51 / 1e-06 AtCLA1, DXS, DXPS2, DEF, CLA1 1-DEOXY-D-XYLULOSE 5-PHOSPHATE SYNTHASE 2, CLOROPLASTOS ALTERADOS 1, Deoxyxylulose-5-phosphate synthase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013401 [exp] 709 / 0 AT1G55510 622 / 0.0 branched-chain alpha-keto acid decarboxylase E1 beta subunit (.1) Lus10032549 [exp] 197 / 3e-58 AT5G50850 628 / 0.0 MACCI-BOU, Transketolase family protein (.1) Lus10032550 [exp] 192 / 3e-58 AT5G50850 613 / 0.0 MACCI-BOU, Transketolase family protein (.1) Lus10043191 [exp] 198 / 2e-56 AT5G50850 635 / 0.0 MACCI-BOU, Transketolase family protein (.1) Lus10038505 [exp] 182 / 1e-53 AT2G34590 693 / 0.0 Transketolase family protein (.1) Lus10023304 [exp] 179 / 2e-52 AT2G34590 687 / 0.0 Transketolase family protein (.1) Lus10039361 [exp] 51 / 5e-08 AT5G50850 135 / 9e-40 MACCI-BOU, Transketolase family protein (.1) Lus10015519 [exp] 49 / 3e-06 AT4G15560 578 / 0.0 1-DEOXY-D-XYLULOSE 5-PHOSPHATE SYNTHASE 2, CLOROPLASTOS ALTERADOS 1, Deoxyxylulose-5-phosphate synthase (.1) Lus10015517 [exp] 49 / 4e-06 AT4G15560 1020 / 0.0 1-DEOXY-D-XYLULOSE 5-PHOSPHATE SYNTHASE 2, CLOROPLASTOS ALTERADOS 1, Deoxyxylulose-5-phosphate synthase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G222800 [exp] 598 / 0 AT1G55510 632 / 0.0 branched-chain alpha-keto acid decarboxylase E1 beta subunit (.1) Potri.001G061400 [exp] 194 / 1e-58 AT5G50850 640 / 0.0 MACCI-BOU, Transketolase family protein (.1) Potri.003G166400 [exp] 193 / 3e-58 AT5G50850 636 / 0.0 MACCI-BOU, Transketolase family protein (.1) Potri.017G076500 [exp] 177 / 8e-52 AT2G34590 671 / 0.0 Transketolase family protein (.1) Potri.004G129800 [exp] 173 / 5e-50 AT2G34590 634 / 0.0 Transketolase family protein (.1) Potri.006G171700 [exp] 52 / 3e-07 AT4G15560 1037 / 0.0 1-DEOXY-D-XYLULOSE 5-PHOSPHATE SYNTHASE 2, CLOROPLASTOS ALTERADOS 1, Deoxyxylulose-5-phosphate synthase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0254 [flax] [poplar] THDP-binding PF02779 [flax] [poplar] Transket_pyr Transketolase, pyrimidine binding domain CL0591 [flax] [poplar] TKC_like PF02780 [flax] [poplar] Transketolase_C Transketolase, C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10010324 pacid=23169563 polypeptide=Lus10010324 locus=Lus10010324.g ID=Lus10010324.BGIv1.0 annot-version=v1.0 ATGGCTTCCTTGTTGAGGAAATTCGGAAGAAAATCGTCATTGGGCAGTGTTTCATGTTACAAGAACTGCCACCACCATTTCTCCACTGCAGCGGTCTCAG CTTCTGCTCCTGAAGCAGTTAAACAGCAGCAAACTGGGAAATCTATCAACCTATATTCTGCAATCAATCAAGCTCTCCACATCGCCTTGGACTCTGATCC TCGTTCTTATGTATTTGGGGAAGATGTGGGCTTTGGTGGAGTCTTTCGTTGTTCCACAGGATTAGCTGAGCGCTTTGGTAAACAAAGGGTTTTCAACACC CCACTTTGTGAGCAGGGGATTGTTGGATTCGCCATTGGTCTAGCAGCTATGGACAACCGAGCCATAGCAGAAATCCAATTTGCAGATTATATTTTCCCTG CTTTCGACCAGATTGTTAATGAAGCTGCAAAGTTCAGGTATCGTAGTGGAGGCCAATTTAATTGTGGAGGTTTAACAATAAGAGCACCTTATGGAGCTGT GGGCCATGGCGGACATTACCACTCCCAATCCCCTGAAGCTTTTTTCTGTCATGTTCCTGGTATAAAGGTGGTGATCCCTCGTAGCCCTAGTCAAGCAAAA GGATTATTGCTTTCATGCATAAGGGACCCGAATCCTGTTGTCTTTTTCGAACCAAAGTGGCTATATCGGTTGGCAGTGGAAGATGTACCTGAGCATGACT ATATGCTCCCTCTATCAGAGGCAGAGGTGATTCGTGAAGGCAGTGATATAACACTTGTTGGTTGGGGGGCACAACTTTCGATCATGGAACAAGCCTGTAT TGACGCCGAGAAGGAGGGGATCTCTTGTGAGTTGTTAGACTTGAAGACCCTAATACCTTGGGATAAGGAAACAGTGGAGGCCTCGGTTAGAAAGACAGGG AGATTACTTGTGAGTCATGAAGCTCCGATTACAGGAGGATTTGGTGCAGAGATATCTGCATCAATCGTAGAGCGTTGCTTCCTAAGGTTGGAAGCCCCAG TGAGCAGAGTATGTGGGCTGGACACGCCTTTCCCTCTAGTGTTTGAACCATTCTACATGCCGAACAAGAATAAGGTACTAAATCAGAAGACGTTGATCTG A
AA sequence Show only first row Show all	>Lus10010324 pacid=23169563 polypeptide=Lus10010324 locus=Lus10010324.g ID=Lus10010324.BGIv1.0 annot-version=v1.0 MASLLRKFGRKSSLGSVSCYKNCHHHFSTAAVSASAPEAVKQQQTGKSINLYSAINQALHIALDSDPRSYVFGEDVGFGGVFRCSTGLAERFGKQRVFNT PLCEQGIVGFAIGLAAMDNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGGQFNCGGLTIRAPYGAVGHGGHYHSQSPEAFFCHVPGIKVVIPRSPSQAK GLLLSCIRDPNPVVFFEPKWLYRLAVEDVPEHDYMLPLSEAEVIREGSDITLVGWGAQLSIMEQACIDAEKEGISCELLDLKTLIPWDKETVEASVRKTG RLLVSHEAPITGGFGAEISASIVERCFLRLEAPVSRVCGLDTPFPLVFEPFYMPNKNKVLNQKTLI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G55510		BCDH BETA1, BCD...	branched-chain alpha-keto acid...		Lus10010324 [exp]	0	1
AT3G46060		ARA3, Ara-3, At...	RAB GTPase homolog 8A (.1.2.3)		Lus10024423 [exp]	1.4	0.9155
AT4G17486			PPPDE putative thiol peptidase...		Lus10013657 [exp]	6.9	0.9093
AT1G26300			BSD domain-containing protein ...		Lus10019194 [exp]	9.2	0.8694
AT5G61240			Leucine-rich repeat (LRR) fami...		Lus10037108 [exp]	9.5	0.8853
AT3G62140			unknown protein		Lus10038035 [exp]	9.9	0.8926
AT5G13500			unknown protein		Lus10036037 [exp]	11.4	0.9027
AT3G27530		MAG4, GC6	MAIGO 4, golgin candidate 6 (....		Lus10032089 [exp]	11.7	0.9008
AT5G59210			myosin heavy chain-related (.1...		Lus10040740 [exp]	12.5	0.8603
AT4G17720			RNA-binding (RRM/RBD/RNP motif...		Lus10025743 [exp]	13.9	0.8927
AT5G59460			scarecrow-like transcription f...		Lus10001576 [exp]	14.4	0.8557

Compare expression of checked genes

Lus10010324 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.