Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G26370 315 / 2e-107 antitermination NusB domain-containing protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013400 [exp] 480 / 3e-172 AT4G26370 315 / 5e-107 antitermination NusB domain-containing protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G222900 [exp] 365 / 2e-127 AT4G26370 347 / 4e-120 antitermination NusB domain-containing protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0633 [flax] [poplar] NusB PF01029 [flax] [poplar] NusB NusB family
Representative CDS sequence Show only first row Show all	>Lus10010325 pacid=23169512 polypeptide=Lus10010325 locus=Lus10010325.g ID=Lus10010325.BGIv1.0 annot-version=v1.0 ATGTCTTCTTCTTGTTCCCCATCTTCATCTTCTAGCCAATGTTACTTTCCCCCAATCCCTCAGCTCAGAAATGCTCGTTCCCGCTCATCAATTTCTATAC GCAGAACCAACATCTTCCGTCCAATCTCGCTGCTTCCATCTCCTCCCGCTTCCGCCTCTTCTCTGCGCGCTTCTGCCTTCCAGGTGGTTCAAAATTCGAC CACCATTGCCCCTGAAGCCACCCCGACTGAAGAAGGCGATAACACCGTTGATGTTGTGATGCCCAAGATTGACAAGAGTGGAAGGTTTTGCAGTCCTCGA GCCGGCCGTGAGCTCGCCCTAATGATCACTTATGCGTCGTGTTTAGAAGGTTCTGATCCAATTCGACTGTTTGAGAAGCGAATGAATGTAAGGAAAGAGC CTGGCTATGAGTTCGATAAGTCGTCATTATTGGAATATAATCCCATGAATTTTGGTGGACCGCCTGTTACAACCGACACCATTGAAGAGGCTGATGAGCT TCTCAGCAGGGATAACAAAGCATCCGCCATTGAAGCTGAAGTCCTCTCGGCTCCTCCAAAGTTGGTGTACAGCAAACTGCTTTTGCGTTTCACAAGGAAG CTTTTGGTAGCTGTTGTGGACAAGTGGGACAGTCATGTACGAGTCATTGACGAAATTGCTCCCCCGAATTGGAAGAATGAGCCAGCAAGCAGAATCTTGG AGCTATGCATCCTCCACCTGGCAATGTCTGAGATTACAGTTATTGGAACACGACATCAGATTGTCATTAATGAGGCTGTAGATCTCGCTAAACGGTTCTG CGATGGCTCAGCACCACGGATAATCAACGGATGTTTGAGGACGTTTATGACGGGTCTATTTGAAATTGATGCGATTCAAGCTCCAGCTGGTGATCAGGAT GCCCTATGA
AA sequence Show only first row Show all	>Lus10010325 pacid=23169512 polypeptide=Lus10010325 locus=Lus10010325.g ID=Lus10010325.BGIv1.0 annot-version=v1.0 MSSSCSPSSSSSQCYFPPIPQLRNARSRSSISIRRTNIFRPISLLPSPPASASSLRASAFQVVQNSTTIAPEATPTEEGDNTVDVVMPKIDKSGRFCSPR AGRELALMITYASCLEGSDPIRLFEKRMNVRKEPGYEFDKSSLLEYNPMNFGGPPVTTDTIEEADELLSRDNKASAIEAEVLSAPPKLVYSKLLLRFTRK LLVAVVDKWDSHVRVIDEIAPPNWKNEPASRILELCILHLAMSEITVIGTRHQIVINEAVDLAKRFCDGSAPRIINGCLRTFMTGLFEIDAIQAPAGDQD AL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G26370			antitermination NusB domain-co...		Lus10010325 [exp]	0	1
AT5G22640		EMB1211	embryo defective 1211, MORN (M...		Lus10009392 [exp]	2.0	0.9512
AT5G22640		EMB1211	embryo defective 1211, MORN (M...		Lus10020545 [exp]	2.2	0.9523
AT1G11290		CRR22	CHLORORESPIRATORY REDUCTION22,...		Lus10042924 [exp]	3.0	0.9473
AT4G28590		MRL7	Mesophyll-cell RNAi Library li...		Lus10022899 [exp]	3.2	0.9380
AT5G01590			unknown protein		Lus10012500 [exp]	3.9	0.9430
AT3G05510			Phospholipid/glycerol acyltran...		Lus10029891 [exp]	4.9	0.9442
AT5G50110			S-adenosyl-L-methionine-depend...		Lus10043465 [exp]	7.5	0.8934
AT5G57180		CIA2	chloroplast import apparatus 2...		Lus10025459 [exp]	7.7	0.9367
AT4G26370			antitermination NusB domain-co...		Lus10013400 [exp]	8.5	0.9383
AT2G01440			DEAD/DEAH box RNA helicase fam...		Lus10034589 [exp]	8.9	0.8839

Compare expression of checked genes

Lus10010325 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.