Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G56360 551 / 0 PSL4 PRIORITY IN SWEET LIFE 4, calmodulin-binding protein (.1) AT2G42390 154 / 4e-43 protein kinase C substrate, heavy chain-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013398 [exp] 1054 / 0 AT5G56360 611 / 0.0 PRIORITY IN SWEET LIFE 4, calmodulin-binding protein (.1) Lus10026874 [exp] 249 / 2e-73 AT5G56360 236 / 1e-68 PRIORITY IN SWEET LIFE 4, calmodulin-binding protein (.1) Lus10002183 [exp] 145 / 8e-40 AT2G42390 206 / 2e-67 protein kinase C substrate, heavy chain-related (.1) Lus10039901 [exp] 87 / 1e-17 AT1G06260 346 / 4e-117 Cysteine proteinases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G223000 [exp] 683 / 0 AT5G56360 587 / 0.0 PRIORITY IN SWEET LIFE 4, calmodulin-binding protein (.1) Potri.001G001700 [exp] 667 / 0 AT5G56360 539 / 0.0 PRIORITY IN SWEET LIFE 4, calmodulin-binding protein (.1) Potri.013G060332 [exp] 257 / 9e-82 AT5G56360 227 / 8e-71 PRIORITY IN SWEET LIFE 4, calmodulin-binding protein (.1) Potri.013G060266 [exp] 223 / 2e-68 AT5G56360 218 / 3e-67 PRIORITY IN SWEET LIFE 4, calmodulin-binding protein (.1) Potri.019G092100 [exp] 154 / 4e-43 AT2G42390 204 / 6e-67 protein kinase C substrate, heavy chain-related (.1) Potri.013G124000 [exp] 153 / 6e-43 AT2G42390 215 / 3e-71 protein kinase C substrate, heavy chain-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0226 [flax] [poplar] M6PR PF07915 [flax] [poplar] PRKCSH Glucosidase II beta subunit-like protein
Representative CDS sequence Show only first row Show all	>Lus10010326 pacid=23169485 polypeptide=Lus10010326 locus=Lus10010326.g ID=Lus10010326.BGIv1.0 annot-version=v1.0 ATGAGAGTAGCATCAGCAACGAACTCAGTGGATGTTGTCCCATTGCTGGGATTTGTGGTGGTGGGATTGCTATGTTTGGCTTCATTTGGGAGATCAGCTG TCCCTCAAAATCCATTCCTCGGAATCCCTCCACAGGATTTGACTTATTTTAAAGCGTCCGGCAGTGTCATTAAGTGTAGAGAAGGATCTAGAACTTTTAC CTCAGCTCAGCTTAACGATGACTTCTGCGATTGCCCTGATTCTACTGATGAGCCTGGCACATCAGCGTGTCCCGGCGGGAAATTTTACTGCCAAAATGCA GGACACACTCCTGTCTACTTATTCTCTTCCAGAGTCAATGATGGCCTTTGTGATTGTTGCGATGGAAGTGATGAATACGATGGCCAAGTCAAATGTCCAA ACACGTGTTGGGAGGCTGGAAAAGCAGCTAGAGATAAGTTGAAGAAAAGGATTGCTACATATAAAGAGGGGGCTGTTTCTAGAAAGCAGGAAATTGGGCA AGCAACATTAGCATTTGCGAAAGATGAGGAGGAGTTGAAGAAACTTAAAAATGAGGAGAGTATACTGAAAGGCCTTGTTCAGCAATTAAAAGACCGAAAA GAACAAATAGAGAAAGCAGAAGAGAAAGAACGCTTACAGAAAGAAAAAGAAGAAAAAGAAAGAAAAGAAGCAGAAAAAACGGCTCACAGTGGGAAGAGTG GAGATGTGGATGACAAAGCTAAGCAGAAAATAATAGAAGGCGAAGAGGAAAGTGCTGAGAGTCCGGCTGACGAGAAAATTGGCGTCTTAGATGATTCTGT TGAAAAGGATTTGCCACAAGAGTATGCTGATACAATGGCTGAAGCGCATAGTGATGCAGCCATAACTGAAGGATCACACGAAAATGAAGAGAAACAGCAT GTCAAGGAAAGCGAAGGAGACTCAATTTCACCAAAAAACAATGAAGATTCTCAAGATGCGTCAGGAACTGGCCATGAAGTGAGCAACGAGTTGTCTCATG ATCAATCTTTGAAATCGGGGCATGAAGTATCTGAAAACACTGAAGGATTATCAAGGGAGGAGGTTGGCCGCCTTGTTGCTTCTCGTTGGACAGGAAGTTC TGAGCAGAAAACAGTGGAAGTTGAAGATTCAAAGCATTACGAACAAGAAGACCTGGAAGAAAGTGGCGATATGGAGAGTGACACACACGATCAAGAAGAT GGCGATGACGATGACAGAGGAAGATATGATGACGTGGATGACGAAGATGACACAGATGATACATATGAAGCAGACAATCAGTATGATGATGCTAGTTCAT CATACAAACCTGAATCTGATGATGAGCTAGACTCTTTAGATACAACAATCCCAAGTAGCCCATCTTGGTTAGAGAAGATACAGCAGACTGTGCGGAGTAT TCTACAGTCTGTTAATTTATTTCAAACTCCGGTGGATACATCAGATGCTGACAATGTGCGGAAGCAATACGATGAAACCAATTCGAAGCTGACAAAACTA CAGTCAAGGATATCAAGTTTGACAAAGAAACTAAAACATGATTTTGGGCCAGAGAAGGAGTTCTATCTTTTGCATGACAACTGTTATGAGACCAAGCAGG ACAAGTATACATACAAAATCTGTCCATTCAAACAAGCTTCTCAAGTGGAGGGACACTCTACAACAACTTTGGGACGCTGGGACAAGTTTGAGGACTCGTA TCGCACTATGATGTTCTCAAATGGAGATAAATGCTGGAACGGGCCGGATAGAAGTTTAAAGGTCAGGCTAAGATGTGGATTGAAGAACGAGGTTGCAGAT GTCGACGAGCCAAGCCGTTGCGAGTACGTAGCGTTGTTTGCTACGCCAGCTCTCTGTTTGGAAAGCAAGATCAAGGAATTTGAGGATAAATTGGAGAAGA TGAACAAACAACAACCACAAGCTCACGATGAACTGTGA
AA sequence Show only first row Show all	>Lus10010326 pacid=23169485 polypeptide=Lus10010326 locus=Lus10010326.g ID=Lus10010326.BGIv1.0 annot-version=v1.0 MRVASATNSVDVVPLLGFVVVGLLCLASFGRSAVPQNPFLGIPPQDLTYFKASGSVIKCREGSRTFTSAQLNDDFCDCPDSTDEPGTSACPGGKFYCQNA GHTPVYLFSSRVNDGLCDCCDGSDEYDGQVKCPNTCWEAGKAARDKLKKRIATYKEGAVSRKQEIGQATLAFAKDEEELKKLKNEESILKGLVQQLKDRK EQIEKAEEKERLQKEKEEKERKEAEKTAHSGKSGDVDDKAKQKIIEGEEESAESPADEKIGVLDDSVEKDLPQEYADTMAEAHSDAAITEGSHENEEKQH VKESEGDSISPKNNEDSQDASGTGHEVSNELSHDQSLKSGHEVSENTEGLSREEVGRLVASRWTGSSEQKTVEVEDSKHYEQEDLEESGDMESDTHDQED GDDDDRGRYDDVDDEDDTDDTYEADNQYDDASSSYKPESDDELDSLDTTIPSSPSWLEKIQQTVRSILQSVNLFQTPVDTSDADNVRKQYDETNSKLTKL QSRISSLTKKLKHDFGPEKEFYLLHDNCYETKQDKYTYKICPFKQASQVEGHSTTTLGRWDKFEDSYRTMMFSNGDKCWNGPDRSLKVRLRCGLKNEVAD VDEPSRCEYVALFATPALCLESKIKEFEDKLEKMNKQQPQAHDEL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G56360		PSL4	PRIORITY IN SWEET LIFE 4, calm...		Lus10010326 [exp]	0	1
AT5G53800			unknown protein		Lus10014800 [exp]	1.0	0.9482
AT1G09700		DRB1, HYL1	HYPONASTIC LEAVES 1, DSRNA-BIN...		Lus10023248 [exp]	2.8	0.9020
AT2G24580			FAD-dependent oxidoreductase f...		Lus10020132 [exp]	3.0	0.8821
AT5G06570			alpha/beta-Hydrolases superfam...		Lus10013376 [exp]	3.7	0.8901
AT5G14440			Surfeit locus protein 2 (SURF2...		Lus10022288 [exp]	6.5	0.8936
AT1G76810			eukaryotic translation initiat...		Lus10030500 [exp]	7.7	0.9142
AT5G41020	MYB		myb family transcription facto...		Lus10041714 [exp]	8.9	0.8763
AT3G47300		SELT	SELT-like protein precursor (....		Lus10001253 [exp]	11.0	0.8821
AT1G76820			eukaryotic translation initiat...		Lus10012856 [exp]	12.2	0.9048
AT4G25390			Protein kinase superfamily pro...		Lus10027393 [exp]	14.1	0.8730

Compare expression of checked genes

Lus10010326 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.