Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G56350 930 / 0 Pyruvate kinase family protein (.1) AT4G26390 895 / 0 Pyruvate kinase family protein (.1) AT5G08570 824 / 0 Pyruvate kinase family protein (.1) AT5G63680 822 / 0 Pyruvate kinase family protein (.1) AT3G04050 759 / 0 Pyruvate kinase family protein (.1) AT3G55650 738 / 0 Pyruvate kinase family protein (.1) AT3G25960 733 / 0 Pyruvate kinase family protein (.1) AT3G55810 687 / 0 Pyruvate kinase family protein (.1) AT3G52990 390 / 5e-131 Pyruvate kinase family protein (.1.2) AT2G36580 384 / 2e-128 Pyruvate kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013396 [exp] 1041 / 0 AT5G56350 931 / 0.0 Pyruvate kinase family protein (.1) Lus10041003 [exp] 851 / 0 AT5G08570 928 / 0.0 Pyruvate kinase family protein (.1) Lus10017364 [exp] 828 / 0 AT5G08570 907 / 0.0 Pyruvate kinase family protein (.1) Lus10010159 [exp] 814 / 0 AT5G08570 896 / 0.0 Pyruvate kinase family protein (.1) Lus10003439 [exp] 779 / 0 AT5G56350 759 / 0.0 Pyruvate kinase family protein (.1) Lus10026875 [exp] 759 / 0 AT5G56350 759 / 0.0 Pyruvate kinase family protein (.1) Lus10013449 [exp] 498 / 1e-176 AT5G08570 543 / 0.0 Pyruvate kinase family protein (.1) Lus10035581 [exp] 381 / 2e-127 AT3G52990 941 / 0.0 Pyruvate kinase family protein (.1.2) Lus10008644 [exp] 381 / 4e-127 AT3G52990 967 / 0.0 Pyruvate kinase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G223100 [exp] 957 / 0 AT5G56350 915 / 0.0 Pyruvate kinase family protein (.1) Potri.001G001600 [exp] 955 / 0 AT5G56350 913 / 0.0 Pyruvate kinase family protein (.1) Potri.013G060400 [exp] 844 / 0 AT5G56350 835 / 0.0 Pyruvate kinase family protein (.1) Potri.010G254900 [exp] 831 / 0 AT5G08570 927 / 0.0 Pyruvate kinase family protein (.1) Potri.019G032600 [exp] 831 / 0 AT5G56350 816 / 0.0 Pyruvate kinase family protein (.1) Potri.008G002500 [exp] 822 / 0 AT5G08570 933 / 0.0 Pyruvate kinase family protein (.1) Potri.006G117400 [exp] 384 / 1e-128 AT3G52990 988 / 0.0 Pyruvate kinase family protein (.1.2) Potri.010G233200 [exp] 378 / 5e-126 AT3G52990 901 / 0.0 Pyruvate kinase family protein (.1.2) Potri.008G027100 [exp] 377 / 7e-126 AT3G52990 901 / 0.0 Pyruvate kinase family protein (.1.2) Potri.003G088700 [exp] 280 / 1e-87 AT1G32440 836 / 0.0 plastidial pyruvate kinase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0151 [flax] [poplar] PK_TIM PF00224 [flax] [poplar] PK Pyruvate kinase, barrel domain CL0151 [flax] [poplar] PF02887 [flax] [poplar] PK_C Pyruvate kinase, alpha/beta domain
Representative CDS sequence Show only first row Show all	>Lus10010329 pacid=23169522 polypeptide=Lus10010329 locus=Lus10010329.g ID=Lus10010329.BGIv1.0 annot-version=v1.0 ATGGTGAGTGACACGAGCAACAACGCTGCACCGCCGACGCAGATGGAGAAGAGGCCCAAGACTAAGATCGTCTGCACTCTGGGGCCGGCCTCCAGATCTA TTCCCATGGCGGAGAAGCTCCTCCGTGCCGGCATGAACGTCGCCCGCTTCAATTTCTCACACGGATCTCACGAGTATCATCAGGAGACTCTCGACAATCT CCGTACCGCCATGGTCAACACCGGCATCCTCTGCGCTGTCATGCTCGACACCAAGGGGCCAGAAATCCGCACTGGATTCCTCAAGGATGGTAAACCTATC CAACTGACGCAGGGTCAAGAAATCACTATATCTACTGATTACACCATTAAGGGAGATGAGAATACGATTTGCATGAGCTACAAAAAGTTGGCTCAAGATG TGAAGCCTGGTATGGTGATTCTCTGTTCTGATGGTACAATCTCCTTCACTGTCTTGTCGTGTGACACAGAAGCTGGATTGGTCCAGTGCCGATGCGAGAA CTCTGCTGTTCTTGGCGAGAGGAAAAATGTTAATCTCCCCGGTGTCATAGTTGACCTCCCGACCTTGACTGAGAAAGACAAGGAAGATATCATGAAGTGG GGAGTTCCAAATTCAATTGACATGATAGCCCTCTCTTTCGTAAGAAAAGGCTCGGATCTAGTTGAGGTGAGGAAGTTGCTGGGACCTCATGCCAAGAATA TCCTTCTTATGTCAAAGGTGGAAAATCAAGAGGGAGTTGCAAATTTCGATGATATATTAGCCAATACAGATGCTTTTATGGTAGCACGTGGGGATCTCGG AATGGAAATTCCCATTGAGAAGATCTTTCTGGCACAGAAAGTAATGATCTACAAGTGCAACATTCAAGGAAAGCCAGTCGTGACCGCAACTCAGATGTTG GAGTCTATGATCAAGTCCCCCAGGCCAACCAGAGCTGAAGCCACCGACGTCGCAAACGCAGTTCTCGACGGAACAGACTGTGTTATGCTGAGCGGCGAAA CGGCAGCTGGAGCTTATCCGGAACTCGCCGTCCGAACCATGGCTAGGATATGCCTGGAAGCGGAGAGTACGCTGGACTATGGAGACGTTTTCAAGAGAAT AATGCAGCACTCGCCTGTGCCAATGAGCCCGCTGGAGAGCTTAGCCTCGTCAGCAGTCAGGACGGCGAACTCGGCAAGAGCTTCCCTTATTTTGGTACTG ACCAGGGGAGGAAGCACTGCAAAGCTGGTTGCTAAGTACCGTCCGGGGATGCCGATTCTTTCGGTGGTCGTCCCGGAGATAAAGACGGATTCTTTCGATT GGTCGTGCAGCGACGAAGCTCCGGCGAGGCATAGCCTGATATTCCGCGGGTTGGTGCCGGTTCTGTATGCAGGTTCGGCTAGGGCGTCTGACGAGGAGAC GACCGAAGAAGCTCTTGATTTTTCGGTGCAGCATGCAAAGTCGAAGGGACTGTGTAAGACTGGGGACTCTGTTGTGGCTCTGCATCGGGTGGGAACTGCA TCAGTGATCAAGATCATAACCGTCAAGTAG
AA sequence Show only first row Show all	>Lus10010329 pacid=23169522 polypeptide=Lus10010329 locus=Lus10010329.g ID=Lus10010329.BGIv1.0 annot-version=v1.0 MVSDTSNNAAPPTQMEKRPKTKIVCTLGPASRSIPMAEKLLRAGMNVARFNFSHGSHEYHQETLDNLRTAMVNTGILCAVMLDTKGPEIRTGFLKDGKPI QLTQGQEITISTDYTIKGDENTICMSYKKLAQDVKPGMVILCSDGTISFTVLSCDTEAGLVQCRCENSAVLGERKNVNLPGVIVDLPTLTEKDKEDIMKW GVPNSIDMIALSFVRKGSDLVEVRKLLGPHAKNILLMSKVENQEGVANFDDILANTDAFMVARGDLGMEIPIEKIFLAQKVMIYKCNIQGKPVVTATQML ESMIKSPRPTRAEATDVANAVLDGTDCVMLSGETAAGAYPELAVRTMARICLEAESTLDYGDVFKRIMQHSPVPMSPLESLASSAVRTANSARASLILVL TRGGSTAKLVAKYRPGMPILSVVVPEIKTDSFDWSCSDEAPARHSLIFRGLVPVLYAGSARASDEETTEEALDFSVQHAKSKGLCKTGDSVVALHRVGTA SVIKIITVK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G56350			Pyruvate kinase family protein...		Lus10010329 [exp]	0	1
AT1G05810		ARA, Ara-1, AtR...	ARABIDOPSIS THALIANA RAB GTPAS...		Lus10038226 [exp]	2.4	0.8942
AT2G38610			RNA-binding KH domain-containi...		Lus10035015 [exp]	5.7	0.8668
AT5G18520			Lung seven transmembrane recep...		Lus10025283 [exp]	6.1	0.9062
AT3G15350			Core-2/I-branching beta-1,6-N-...		Lus10019477 [exp]	7.5	0.8883
AT5G42660			Protein of unknown function (D...		Lus10032311 [exp]	7.7	0.8637
AT5G42660			Protein of unknown function (D...		Lus10024684 [exp]	8.4	0.8631
AT3G56820			unknown protein		Lus10012105 [exp]	9.5	0.8672
AT4G34490		ATCAP1	cyclase associated protein 1 (...		Lus10026338 [exp]	13.2	0.8783
AT2G38610			RNA-binding KH domain-containi...		Lus10021676 [exp]	14.4	0.8128
AT5G26667		PYR6	P-loop containing nucleoside t...		Lus10031611 [exp]	15.1	0.8582

Compare expression of checked genes

Lus10010329 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.