Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G28110 133 / 1e-37 SCPL45 serine carboxypeptidase-like 45 (.1.2) AT2G33530 128 / 6e-36 SCPL46 serine carboxypeptidase-like 46 (.1) AT5G42230 106 / 9e-28 SCPL41 serine carboxypeptidase-like 41 (.1) AT2G12480 105 / 2e-27 SCPL43 serine carboxypeptidase-like 43 (.1.2) AT3G63470 105 / 3e-27 SCPL40 serine carboxypeptidase-like 40 (.1) AT5G42240 104 / 4e-27 SCPL42 serine carboxypeptidase-like 42 (.1) AT1G43780 104 / 6e-27 SCPL44 serine carboxypeptidase-like 44 (.1) AT5G23210 102 / 2e-26 SCPL34 serine carboxypeptidase-like 34 (.1.2.3.4) AT3G56540 99 / 4e-26 alpha/beta-Hydrolases superfamily protein (.1) AT2G05850 100 / 8e-26 SCPL38 serine carboxypeptidase-like 38 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010331 [exp] 223 / 7e-72 AT1G28110 540 / 0.0 serine carboxypeptidase-like 45 (.1.2) Lus10021856 [exp] 220 / 4e-71 AT1G28110 525 / 0.0 serine carboxypeptidase-like 45 (.1.2) Lus10013395 [exp] 220 / 5e-71 AT1G28110 534 / 0.0 serine carboxypeptidase-like 45 (.1.2) Lus10040324 [exp] 197 / 4e-62 AT2G33530 532 / 0.0 serine carboxypeptidase-like 46 (.1) Lus10023446 [exp] 194 / 7e-61 AT1G28110 520 / 0.0 serine carboxypeptidase-like 45 (.1.2) Lus10023444 [exp] 184 / 1e-59 AT5G42230 143 / 6e-40 serine carboxypeptidase-like 41 (.1) Lus10003302 [exp] 160 / 5e-48 AT1G28110 498 / 2e-174 serine carboxypeptidase-like 45 (.1.2) Lus10030317 [exp] 158 / 5e-47 AT1G28110 501 / 2e-175 serine carboxypeptidase-like 45 (.1.2) Lus10023882 [exp] 157 / 2e-45 AT1G48410 444 / 2e-146 ARGONAUTE 1, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G034400 [exp] 155 / 3e-46 AT1G28110 566 / 0.0 serine carboxypeptidase-like 45 (.1.2) Potri.016G034600 [exp] 152 / 1e-44 AT1G28110 563 / 0.0 serine carboxypeptidase-like 45 (.1.2) Potri.006G036000 [exp] 148 / 3e-43 AT1G28110 548 / 0.0 serine carboxypeptidase-like 45 (.1.2) Potri.006G036400 [exp] 140 / 1e-40 AT2G33530 547 / 0.0 serine carboxypeptidase-like 46 (.1) Potri.006G036500 [exp] 135 / 2e-38 AT1G28110 619 / 0.0 serine carboxypeptidase-like 45 (.1.2) Potri.012G105500 [exp] 130 / 6e-37 AT1G28110 751 / 0.0 serine carboxypeptidase-like 45 (.1.2) Potri.015G104700 [exp] 128 / 8e-36 AT1G28110 715 / 0.0 serine carboxypeptidase-like 45 (.1.2) Potri.003G164000 [exp] 127 / 1e-35 AT1G28110 758 / 0.0 serine carboxypeptidase-like 45 (.1.2) Potri.001G065900 [exp] 125 / 1e-34 AT1G28110 766 / 0.0 serine carboxypeptidase-like 45 (.1.2) Potri.007G072300 [exp] 108 / 2e-28 AT5G08260 632 / 0.0 serine carboxypeptidase-like 35 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF00450 [flax] [poplar] Peptidase_S10 Serine carboxypeptidase
Representative CDS sequence Show only first row Show all	>Lus10010330 pacid=23169564 polypeptide=Lus10010330 locus=Lus10010330.g ID=Lus10010330.BGIv1.0 annot-version=v1.0 ATGGGTTCTCAGTTATGGCTTGCTTTGTTCATTCTTTCTGCAGTTTTCGCCTCCAAGTTCGGAACAGTCGAGTCGTCATATGAGGTCGACAAGATTGCGA GGTTGCCGGGTCTGCCCGAGGTTAGCTTCGAACAGTATGCAGGTTATGTGACTGTTGGTGAAATCCAACAGAGGAAACTTTTCTACTACTTTGCTGAAGC TCAGACCAACTCTACTTCAAAGCCACTTGTTCTCTGGCTAAATGGAGGGCCTGGTTGCTCTTCAGTTGGAGCCGGAGCTTTCGCCGAGCATGGCCCTTTC CAGCCAAATGCTGCCGGAGTTCTTGTCAACAACGACTACAGTTGGTATATAAACTTAATGGCAAGCAACATCGTGCATTACAGAAACCTAGTTATTCTTA TTGCCTGTAACTAA
AA sequence Show only first row Show all	>Lus10010330 pacid=23169564 polypeptide=Lus10010330 locus=Lus10010330.g ID=Lus10010330.BGIv1.0 annot-version=v1.0 MGSQLWLALFILSAVFASKFGTVESSYEVDKIARLPGLPEVSFEQYAGYVTVGEIQQRKLFYYFAEAQTNSTSKPLVLWLNGGPGCSSVGAGAFAEHGPF QPNAAGVLVNNDYSWYINLMASNIVHYRNLVILIACN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G28110		SCPL45	serine carboxypeptidase-like 4...		Lus10010330 [exp]	0	1
AT3G51530			F-box/RNI-like/FBD-like domain...		Lus10003696 [exp]	4.2	0.6733
AT5G43330		c-NAD-MDH2	cytosolic-NAD-dependent malate...		Lus10021184 [exp]	5.2	0.6880
					Lus10000529 [exp]	11.2	0.6585
AT2G04865			Aminotransferase-like, plant m...		Lus10014633 [exp]	13.0	0.6585
AT5G12060			Plant self-incompatibility pro...		Lus10030964 [exp]	14.5	0.6585
AT5G27260			unknown protein		Lus10032874 [exp]	15.9	0.6585
AT4G17920			RING/U-box superfamily protein...		Lus10035368 [exp]	17.1	0.6585
AT3G13790		ATCWINV1, ATBFR...	ARABIDOPSIS THALIANA CELL WALL...		Lus10037633 [exp]	18.3	0.6585
AT5G50850		MAB1	MACCI-BOU, Transketolase famil...		Lus10039361 [exp]	19.4	0.6585
AT1G61320			FBD / Leucine Rich Repeat doma...		Lus10010664 [exp]	20.5	0.6585

Compare expression of checked genes

Lus10010330 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.