Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G28110 540 / 0 SCPL45 serine carboxypeptidase-like 45 (.1.2) AT2G33530 533 / 0 SCPL46 serine carboxypeptidase-like 46 (.1) AT1G43780 379 / 2e-127 SCPL44 serine carboxypeptidase-like 44 (.1) AT5G42240 378 / 3e-127 SCPL42 serine carboxypeptidase-like 42 (.1) AT5G42230 369 / 6e-124 SCPL41 serine carboxypeptidase-like 41 (.1) AT2G12480 340 / 8e-113 SCPL43 serine carboxypeptidase-like 43 (.1.2) AT4G30610 339 / 3e-112 SCPL24, BRS1 SERINE CARBOXYPEPTIDASE 24 PRECURSOR, BRI1 SUPPRESSOR 1, alpha/beta-Hydrolases superfamily protein (.1) AT3G02110 333 / 1e-109 SCPL25 serine carboxypeptidase-like 25 (.1) AT1G61130 328 / 9e-108 SCPL32 serine carboxypeptidase-like 32 (.1) AT2G24000 325 / 6e-107 SCPL22 serine carboxypeptidase-like 22 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021856 [exp] 944 / 0 AT1G28110 525 / 0.0 serine carboxypeptidase-like 45 (.1.2) Lus10013395 [exp] 891 / 0 AT1G28110 534 / 0.0 serine carboxypeptidase-like 45 (.1.2) Lus10040324 [exp] 826 / 0 AT2G33530 532 / 0.0 serine carboxypeptidase-like 46 (.1) Lus10023446 [exp] 790 / 0 AT1G28110 520 / 0.0 serine carboxypeptidase-like 45 (.1.2) Lus10040326 [exp] 706 / 0 AT2G33530 436 / 2e-150 serine carboxypeptidase-like 46 (.1) Lus10023447 [exp] 704 / 0 AT2G33530 441 / 2e-152 serine carboxypeptidase-like 46 (.1) Lus10003302 [exp] 659 / 0 AT1G28110 498 / 2e-174 serine carboxypeptidase-like 45 (.1.2) Lus10030317 [exp] 657 / 0 AT1G28110 501 / 2e-175 serine carboxypeptidase-like 45 (.1.2) Lus10030315 [exp] 616 / 0 AT1G28110 476 / 3e-161 serine carboxypeptidase-like 45 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G034400 [exp] 635 / 0 AT1G28110 566 / 0.0 serine carboxypeptidase-like 45 (.1.2) Potri.006G036000 [exp] 632 / 0 AT1G28110 548 / 0.0 serine carboxypeptidase-like 45 (.1.2) Potri.016G034600 [exp] 629 / 0 AT1G28110 563 / 0.0 serine carboxypeptidase-like 45 (.1.2) Potri.006G036500 [exp] 577 / 0 AT1G28110 619 / 0.0 serine carboxypeptidase-like 45 (.1.2) Potri.006G036400 [exp] 576 / 0 AT2G33530 547 / 0.0 serine carboxypeptidase-like 46 (.1) Potri.003G164000 [exp] 535 / 0 AT1G28110 758 / 0.0 serine carboxypeptidase-like 45 (.1.2) Potri.012G105500 [exp] 531 / 0 AT1G28110 751 / 0.0 serine carboxypeptidase-like 45 (.1.2) Potri.001G065900 [exp] 530 / 0 AT1G28110 766 / 0.0 serine carboxypeptidase-like 45 (.1.2) Potri.015G104700 [exp] 505 / 1e-177 AT1G28110 715 / 0.0 serine carboxypeptidase-like 45 (.1.2) Potri.002G071800 [exp] 365 / 4e-122 AT5G42240 742 / 0.0 serine carboxypeptidase-like 42 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF00450 [flax] [poplar] Peptidase_S10 Serine carboxypeptidase
Representative CDS sequence Show only first row Show all	>Lus10010331 pacid=23169552 polypeptide=Lus10010331 locus=Lus10010331.g ID=Lus10010331.BGIv1.0 annot-version=v1.0 ATGGGTTCTCAGTTATGGATTGTTATCTTCGTTCTTTCTGCAGCTTTCGCCTCCAAGTTCGGAACAGTCGAGTCGTCATATGAGGTCGACAAGATTGCGA GGTTGCCAGGTCAGCCCAAGGTTGGCTTCAAACAGTATGCAGGGTATGTGACAGTTGATGAAATCCAACAGAGGAAACTTTTCTACTACTTTGCTGAAGC TCAGACCAACTCTACTTCAAAGCCACTTGTTCTCTGGCTAAATGGAGGGCCTGGTTGCTCTTCAGTTGGAGCCGGAGCTTTCTCCGAGCATGGCCCTTTC CAGCCAAATGCTGCCGGAGTTCTTGTCAACAACGACTACAGTTGGAACAAAGAAGCAAATATGTTATACTTGGAATCACCAGCAGGAGTTGGATTCTCTT ATTCAGCCAACACCTCTTTCTACAATTTAGTCAATGACACCATAACAGCAAATGACAACTTGGTGTTCCTACAACAGTGGCTACTTAAATTCCCTGAATA TAAGACCAGAGATCTGTTCATCACAGGAGAGAGCTATGCTGGACACTATGTGCCACAACTAGCCCAGCTAATTGTAGAGTCAAGAGCACATCTCAGCTTG AAAGGCATAGCTATAGGAAATCCATTGTTGGAGTTCAACACGGATATGAACGGGGAAGGGAAGTTCTACTGGTCACACGGATTGATTTCGGACTATACGT ATCACCTTGTGAACACAATCTGCAACACTTCCCAGCTGTGGAGGCAATCCGCTTCGGGCACCCTTTCTAAACAGTGTAACATCGTATCAGCACGCTTCGA TGAAGAAATTCCCAGCCACTCATTCGATTCGTATGATGTCACATCTGATGTTTGCCTATCAGATGGTAAGTCACAGCAAAAAGGTGGCAGACTTTCGCCT CTCAAGTCCAAGCAAGGCCGTCTCGGAAAGCTGAAAGCCGGAGGAGAGTCCATAAACCTTTGTGTACAAGACGAGACGGACGGGTATTTGAACAGGAAAG ATGTTCAGGAAGCTATGCATGCCCAGCTTGTTGGCGTTACCAGCTGGAGTTTCTGCAGCGATGTGATGAATTATGACTACAGCAACCTGGAGAACCCGAC AATTGGAGTGGTGGGATCATTGGTAAGTTCAGGAATCAAAGTACTGGTCTACAGCGGGGATCAGGACTCGGTGCTTCCATTCATCGGAACGAGGACTCTG GTGAATCGTCTGGCTAAAGGAATGGGGTTGAACACAACAGTGCCATACAAGCCATGGTTCGACACTGACAAACAGGTCGGAGGATGGACACAAGTTTATG GAGAGAAGAAGGAGCTGGGATTTGCAACCATAAGAGGAGCATCTCACATGGCTCCATTCTCATCTCCAAAGAGGTCTCTGGCACTCTTTGCTGCATTTGT TGCTGGCAAACCATTGGCTGTTTGA
AA sequence Show only first row Show all	>Lus10010331 pacid=23169552 polypeptide=Lus10010331 locus=Lus10010331.g ID=Lus10010331.BGIv1.0 annot-version=v1.0 MGSQLWIVIFVLSAAFASKFGTVESSYEVDKIARLPGQPKVGFKQYAGYVTVDEIQQRKLFYYFAEAQTNSTSKPLVLWLNGGPGCSSVGAGAFSEHGPF QPNAAGVLVNNDYSWNKEANMLYLESPAGVGFSYSANTSFYNLVNDTITANDNLVFLQQWLLKFPEYKTRDLFITGESYAGHYVPQLAQLIVESRAHLSL KGIAIGNPLLEFNTDMNGEGKFYWSHGLISDYTYHLVNTICNTSQLWRQSASGTLSKQCNIVSARFDEEIPSHSFDSYDVTSDVCLSDGKSQQKGGRLSP LKSKQGRLGKLKAGGESINLCVQDETDGYLNRKDVQEAMHAQLVGVTSWSFCSDVMNYDYSNLENPTIGVVGSLVSSGIKVLVYSGDQDSVLPFIGTRTL VNRLAKGMGLNTTVPYKPWFDTDKQVGGWTQVYGEKKELGFATIRGASHMAPFSSPKRSLALFAAFVAGKPLAV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G28110		SCPL45	serine carboxypeptidase-like 4...		Lus10010331 [exp]	0	1
AT2G41040			S-adenosyl-L-methionine-depend...		Lus10008815 [exp]	8.2	0.8648
AT4G03410			Peroxisomal membrane 22 kDa (M...		Lus10018568 [exp]	15.5	0.8503
AT1G07010		AtSLP1	Shewenella-like protein phosph...		Lus10031284 [exp]	19.1	0.8521
AT5G10770			Eukaryotic aspartyl protease f...		Lus10038732 [exp]	22.7	0.8335
AT5G19855		AtRbcX2	homologue of cyanobacterial Rb...		Lus10002563 [exp]	22.7	0.8468
AT5G52420			unknown protein		Lus10027493 [exp]	25.3	0.8202
AT1G28110		SCPL45	serine carboxypeptidase-like 4...		Lus10021856 [exp]	30.2	0.8014
AT1G62850			Class I peptide chain release ...		Lus10032202 [exp]	30.9	0.7274
AT4G02920			unknown protein		Lus10029640 [exp]	32.8	0.8395
AT1G50250		FTSH1	FTSH protease 1 (.1)		Lus10012277 [exp]	35.7	0.8151

Compare expression of checked genes

Lus10010331 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.