Plant FIBer expression Database

Lus10010333 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G55535 253 / 1e-85 unknown protein
AT3G13420 209 / 2e-68 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10021858
[exp]
345 / 1e-120 AT1G55535 273 / 1e-91 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G001400
[exp]
268 / 8e-92 AT1G55535 273 / 6e-93 unknown protein
Potri.003G223300
[exp]
196 / 7e-64 AT1G55535 207 / 3e-67 unknown protein
PFAM info
Representative CDS sequence
>Lus10010333 pacid=23169475 polypeptide=Lus10010333 locus=Lus10010333.g ID=Lus10010333.BGIv1.0 annot-version=v1.0
ATGATGATTTGTTGTGTATTCAAAGATCGTCTGCAGAATTGGCTTCGTGACTACGATAGGCTTCAGTATGTGGCTGTCATCCTCATCTACATTCAGATAG
GATGCTCGTTGATTGGATCCCTGGGAGCATTGTACACGGGGGTTTTGCTCATCAATCTTAGCATCGCATTGTTCGCTCTTGTCGCCATCGAGAGTAGCAG
TCAGAGCCTCGGCCGCACTTATGCCGTCCTTCTCTTCTCCTCCATCTGCCTCGACATTTCCTGGTTCTTCTTTTTCTTCTCTGACATTTGGGAAATTTCT
TCCGAGACATATGGAGTGTTGTTCATCTTTTCAGTGAAACTCACTTTGGCAATGCAGATTGTTGGATTTTCTGTGAGGTTATCATCGTCTTTCTTGTGGA
TTCAGATATATAGGTTGGGAGTATCAAATGTGGAGAGTGGAGCTCCACGAGAAGCAGATTTTGATTTGAGAAATAGCTTTTTGAGTCCTACAACTCCTGT
TGTAGCTAGACAATGCTCCGAGTCTGATGTTTTAGGGGGTGCTATTTACGATCCTTCTTACTATTCGTCGCTCTTTGAAGATGGTCAAGAAAATAGAGGA
TTGCATGGGGTGGGTATCTTCTGA
AA sequence
>Lus10010333 pacid=23169475 polypeptide=Lus10010333 locus=Lus10010333.g ID=Lus10010333.BGIv1.0 annot-version=v1.0
MMICCVFKDRLQNWLRDYDRLQYVAVILIYIQIGCSLIGSLGALYTGVLLINLSIALFALVAIESSSQSLGRTYAVLLFSSICLDISWFFFFFSDIWEIS
SETYGVLFIFSVKLTLAMQIVGFSVRLSSSFLWIQIYRLGVSNVESGAPREADFDLRNSFLSPTTPVVARQCSESDVLGGAIYDPSYYSSLFEDGQENRG
LHGVGIF

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G55535 unknown protein Lus10010333
[exp]
0 1
AT3G45620 Transducin/WD40 repeat-like su... Lus10034751
[exp]
2.6 0.8666
AT1G13880 ELM2 domain-containing protein... Lus10000680
[exp]
3.9 0.8541
AT3G05000 Transport protein particle (TR... Lus10033832
[exp]
4.5 0.8446
AT1G20080 SYT2, NTMCTYPE1... synaptotagmin 2, Calcium-depen... Lus10017268
[exp]
5.7 0.8197
AT3G61050 AtCLB, NTMCTYPE... calcium-dependent lipid-bindin... Lus10041396
[exp]
5.9 0.8440
AT5G15640 Mitochondrial substrate carrie... Lus10012597
[exp]
7.2 0.8259
AT1G48840 Plant protein of unknown funct... Lus10020973
[exp]
7.5 0.8541
AT3G14460 LRR and NB-ARC domains-contain... Lus10026132
[exp]
8.4 0.8299
AT5G41120 Esterase/lipase/thioesterase f... Lus10012560
[exp]
8.5 0.8337
AT5G01990 Auxin efflux carrier family pr... Lus10035610
[exp]
9.6 0.8136

Lus10010333 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.