Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G55540 447 / 1e-128 EMB1011 Nuclear pore complex protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021859 [exp] 2720 / 0 AT1G55540 449 / 2e-129 Nuclear pore complex protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G223400 [exp] 547 / 5e-163 AT1G55540 449 / 9e-130 Nuclear pore complex protein (.1.2) Potri.001G001201 [exp] 231 / 4e-68 AT1G55540 231 / 5e-69 Nuclear pore complex protein (.1.2) Potri.001G001250 [exp] 49 / 3e-05 AT1G55540 48 / 7e-06 Nuclear pore complex protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10010334 pacid=23169562 polypeptide=Lus10010334 locus=Lus10010334.g ID=Lus10010334.BGIv1.0 annot-version=v1.0 ATGGTTGCTTCTGGGCCCGAGGCTTCTTCGGAAGTCAGAATGATACAATTGGAGGAGGAAGAAGAAGGACCTCACTCTGTTAACAATAATTACTTCTTCA ATAGGATCGGCAAGCCCATCCCTATCCTCAAGCAATCTTCCCCTCCTCCTTTCGATTTGCAGAACCCTCCTACTTGCCCTCTCGCCGTCTCAGAAGCTCA CCGCCTCATATTTCTTGCTCATTCCTCTGGGTTTTGTGTTGCCAGGACTAAGGATGTGATTGACGCCGCCGCTCAGATGACCGCAACTTCTGACTCGGAT TCCCCTTGTGTTCAGCAACTGAGCTTTGTTGATGTTCCTATCGCCAATGTTAACATTCTCTCCCTCTCCGCCGACTCTTCTACCCTTGCAGTTGCCGCCG CTGGACAGCTCCATTTCTTTACTGTCACTTCCCTTCTCAATAAGGACGTAGAACCTTCAGTTTCGTGCTCACTCAACGGCTCCAGTACTATCAAGGACGT CCAATGGAGGACAAAATCAGGATCTACTTGCCTTGTCCTTTCCAGTGATCTCAAGCTCCATCATGCTGCTCCGGATGGCCCTCTTAACCTTGTAATGGAT AATGTTGATGCTGTTTCATGGAGTATGAAAGGGAAATCCATTGCCGTTGCAAGAGAGAACAGACTCATTTTCTTGTCGGCAAAATTCAAGGAGAGGTTAT CAATATCTCTGCCATTCAATTCATGGGCTGATGATTCTGACGAAGACAGCATCGTCAAAGTGGATTGCATCAAATGGGTGCGCCTTGATAGCATCATTAT TGGTTGCTTTAAAAAAAACGCGGATGGCATGGAGGATAGTTACCTGCTTCAAGTAATCAGAAGCAAAGGCGGGAAAATCACTGATGCTGCTGCCTCAGAG TTAGTTGTCCTTTCGTTCTACGACCTTTTCATGGAACTTATTGATGACATTGTGCCCTTTGGAAGTGGACCTTACTTGTTTTTCAGCTATTTAGAACAGA GTGCATTGGCTATTGTGGCTAACAGGAAGAACACTGATCAACATATTATGTTGCTTGGTTGGTCTGTTGGAGACGGGGAAGCTGAAACTGCTGTTCTTGA AATTGACCGAGATACCTACCAACCAAAGATCGAGCTTCAAGCTGATGGGGAGGATAATTTAATCATGGGTCTCTCTGTTGATAAAGTTTCGATTTATGGA AACATCAAAGTTGAAGTTGGGCTTGACGATCATAAAGAACTGCCACCACTTTGTGTGCTTATGTGTATTACTCTTGAGGGAAAGCTTGTTATGTTCCACG TTGCGAGTGGAACAGGGAATACAGTTCCATCTGAGGCTGATTCTTCTGTTCATGATGAAGAAGATGACGTCCCTTTTGGATTGTCTGTTGGACGTGATGA CCATAACCTTTCTTCCGCCTTCGGCGATGAAAAAACCGGAAAACTTGCCTTAGGCAGTCAGTTACAGGGTTCTGTTGAACCAGCATCAGGCAATATTAAA GTTAGTGGAATCCCTTCAGAAAAGGACCTTAAGCCTTCTGATACAGAAGATGGGTCAACTGAGGTTGTTTCAGAGAAGAATCCTTGTGTTGACACTCCTG CGAATAACATGGGGAAATATGTAGCTAAGCATGAGTCCGTGGCCAATGAACAGCCAAGAGTTCATGTTCCTGAGATGCAGCAAGGTATAGATGGACAACA GCTGCTGCCGTTTGGACAACAAACTATGAATTTTAACCATTCATCATTTAGCACGAAAGTAAGCGGAGACCCTGGAAGTCGAACTGTGGAGGTTGAAAGG TCAGAAGGTCAAACGTCTGGTGCATTTGAGACTCGTACAGCACCATTTTCTACAAAAGCTTCTCAAATTCTCCCCAGCCAACCAGTCAGTACGGGCGTTC ACAATTTTATTCAACCAACTAAAGCAACACCAGCAAGTGGATCCTCCTTTTCATGGGGTTTTTCACCTCAATTGCAGTCAAGTGGAAAAATATTTCCGGA AAAATCTGAAAGCAAGGCATCCTTATCATATTCAGCCACAAATAAAGAATCTGGTGCTAGTGTAGGTGCAGGAAATTTTGTCAAGAACCATACAGAAAAA CTTGTTCACTTGCCAGATGTTTCAGGTCAATTAGCATCAGTAATTCCAGCTAAACCAGTCCAGATTGGAGGACTTGGAGTTTCAAGTGGAGTTGGGAAGC TGGAATCATTGCCTACCATACGTAGTCCACAGTTGTCTTTTCAGGATGGTTCTGCTCTTGGATCATCTCTGAACCAGAGGCCGTATGCTCAGAAGGAAAG GGCCCAGTCTCTCTCAAATGCTGTGCCAAATATGACAAGACAGTTCGGCAGTATTCAAGAGACGGTCAAGGAATTGGATATACTATTGGAAGGTATTCAA GAAAAGGGTGGCTTCCGGGATGCATGTACTGTTGCTTTGAGAAGTTCGATTGAGGCTCTAGAAACAGGCATTGGTGCTCTTTCTAGAAATTGTGGAAACT TAAAGGGTATGATGGATAAGCAGTTGGAAGAGATCCAACACCTTCTTGACAAGACTATACAAGTATTGGCAAGAAAAACATATATGGAGGGCATCTTGAG GCAAACTTCTGATAGCAAGTACTGGGAACTCTGGGACCGACAAAAGCTGAGCCCTGAACTTGAGCTTAAGCGGCAACACATTTTGGAATTAAACCAGGGT TTGACGAATAAATTAGTTGAATTGGAGAGACACTTGAATACTCTTGAACTCAACCAGTTCGGTGAAAATGATGGTAATGCAGGACGATTAGCTGTTCACA ATAAATATGGGACGTCAAGGCACAGGCAGTCTATACATAGTTTATGTAACACCACACACTCGCAAATCGCTGCTGCTGAACAACTATCCGACTGTCTTTC AAAGCAAATGGCTCTGTTGCAAGTACAATCACCTGTAAAACAAAAGAACATAAAAAAGGAGCTGTTTGAGACGATCGGAATCCCTTATGATGCCTCTTTC AGCTCACCACAAGCAGATAAAAGAGATCATGCATCTCCGTCTAGACGGCCAATAGTGTCTGGTTCTAGTACCAGCAAACAGCAGTCTAGGAGGCGACAGT CAGGGGCATCGAAGGCCTCTGAGCCCGAATCATCAAGGAGAAGAAGAGACTCTTTGGATCAAAACTGGACCAGCTTTGAACCTTCAAAGACGACAGTAAA AAGGATGGAGTTGCAAGAGAATAACGAGTCTAAGGTAAAAAAATCATCCATGCTGATGGATAGACAACGTTTTGGCCCTCATTCGCTGTATGGACAAGAT ATTCCTCCCGTGGAAGACAATGTATCTATACCCTGGCAGTCATATGGAAACAAAGGTATGCAATACCCCTTACCAGAACAGGTGTCCAGACAGAAGCCAA CAACATTTAACTGGGTCAATAACCCTCCAATGACATTGCAAGGCACGGGCTCTGGGTCTGCTATGCTACGAGGTAACAGTACAACACCATTACCGGGTGG GTCAGTGACATCACCTAGCGTTGCTCAAAATTATGCAAAGGAAATTGACAGTGCAACTAGAAATGAAGCAAGTGGCAGAGCTTTTGGGTTTGAAAAACTT GGTTCTGCTTTGATTGGTGAGTCAAAGCTTGACCAGAGATATGCTAACGTACAAAACAAGTTGGCTCCGACCACCAGATCACCATCGGGGTTGTTCTCTG TGCAGAAACCCGTGGAAGTTCGTAATTCCCAGAGCAATATGGCACCTACAAGTCCAGCAGTTGCTGATATGAAGCCTGGGTCAGAAAGTGAAAGAAGGTC ACCATTTGGTTCAGTTGGTCTCTCAGCTCCAAACACACTGGGAAGACCTTCCCAGTCTAGCAATAATGATAAAGGGCCCTCCGTAGGAGTCACAACACCA CTTACTGGTTCTTCTTCTCAAACTACCAATCTCTCGAATATACCATCATCGGTGAAGGCACTGGAGCCTGTGATGTCTGGTTCTAGGGCAAGTCCCGATT CAAGAAGTTCACTTTTTCAGTCTGCTGCCTTTGCAGCTCCCAGTATGCCTGGACCATCTCAGATTAGTTTTGCAACTAACAAAACTCAGCCTGGTGACAA AGTGCAACCTCTAGGCTTCTCGATACAATTTCCAGTTTCATCTTCTCAAACTACCAGTCAGTCAGACGTACAATCTGTACCTTCTGCCACTTCAGCACCT GTGCCTCCACCAGCACGTGGGATATCAATGTCCAGTTCCATGGCCATTAATGATGGAATTCAGAAAGCTTTTTCAGTATCGTCGGCAACAGTTCCCCCTA CTGTCTCATCTGCTGGTTCTTTATCTTTCAGTCCTGCCAAGATACAAAGTTCTTTTTCAGAGTCTCCTGCTAAATTGTTTCAGGGGATCAAAGAAACTGC ATCCTCTTTGAATTTACCTCAACCAACATCTGTGCCTCCACCAAAAGAGGTTCAGCATACAGGTCCCGTTGCTGCAAGTTCTGCTACTCAAATAGAACTT CAGGCTGGTCCGGAGAAAAGTTCTCTTCCAGCGTTGCAGTTAGGTACAACAGGAGATAAACCTTCGTCAGATCAGAGTCTAACGTCCCTTGACTCAGCTG CTTCAGCACAAGAGTCCTCTATAATAGAGATCCCAAGTCCCGCTGACAAATCTGGTACAAAACCAGATGTGATTGCTGTTACAACTGTACAGAATGTGCC TTCATCCAAATCTGAACCGTCAGCATCGCATATCCCTGCAACTGTAGCTACAGTTAGCTTGTCATCTGCTAACCTCTCGCCATTCGGTAAAATTTCAATT TCTACATCCAGTGGACCACTGGGAACAGAGGTTCCACAAGTTCCTCAAACACTGAATCTTTTTCAACCACCAGCTTTTCCTACTAGTTCCAGTGGTACAA AGAATGAAGGCTTAGATGTCGGAGGAGGAGGAGGAGAGGACGAGATGGATGAGGAGGCTCCAGAGACCAGCAAGACCAGTGAACTTAGCTTAGGGAGTCT AGGAGGTTTTGGGATCGGCTCCTCCCCCAACCCCGCTGTTCCCAGAGGAAACCCATTTGGTAGTCCGTTTGGAAGTACGGAAACAAATTCAGCAAGCTCT TCCTTCAGCATGAGTGTGCCTAGTGGTGAATTGTTTAAGCCTGCATCCTTCAGCTTTCCATCTCCACAGCCTCCCCAGTCACCACCCCAGTCTTCTGCTT TCTCTGGTGGCTTTGGGAGTGGAGCAGGTGCGCAAGTTCCAGCACAACAGAGTGCATTTGGGCAGCCGGCCCAAGTTGGGGGTGGTCAGCAAGCACTGGG ATCGGTGCTAGGTACGTTTGGGCAGTCAAGGCAGTTAGGTGCTGGTCTTCCTGTAAGTGGCTTTGGTGGTGGGGCCGCGGGTGCCTTTGGTGGATTTGCA AATAGTAGCCCTCCGGCAGGGGGTGGCTTTGCAAGTGCTGCAACTGGTGGAGGTTTTGCTAGCATGGCAAAGTCTGGCGGCGGTGGTGGAGGATTTGGTG GTTTGGGATCAGCTGGCGGTGGAGGATTTGGTGGTGGTGGTGGAGGATTTGGCGGTGGTGGATTTGGTGCTGCTGCTGCTGGCAGTGGAGGATTTGGTGG TGGTGGTGCTGCTGGTGGATTCGGCGGCGGTGGTTTTGGAGGAGTTGGTGCATCCGGCGGTAGCGGATTTGGAGGTTTTGGGAGCCAACAAGGTGGAGGT GGGAGTGGTGGGGTTTCGTCATTTGGTGGGCAGCAACAAGCAGGAGGAGGAGGGAGTGGTGGGTTTTCGGGTTTCGGTGGAACAGGGAAACCTCCGGAGC TGTTTACACAGATGAGAAAGTAG
AA sequence Show only first row Show all	>Lus10010334 pacid=23169562 polypeptide=Lus10010334 locus=Lus10010334.g ID=Lus10010334.BGIv1.0 annot-version=v1.0 MVASGPEASSEVRMIQLEEEEEGPHSVNNNYFFNRIGKPIPILKQSSPPPFDLQNPPTCPLAVSEAHRLIFLAHSSGFCVARTKDVIDAAAQMTATSDSD SPCVQQLSFVDVPIANVNILSLSADSSTLAVAAAGQLHFFTVTSLLNKDVEPSVSCSLNGSSTIKDVQWRTKSGSTCLVLSSDLKLHHAAPDGPLNLVMD NVDAVSWSMKGKSIAVARENRLIFLSAKFKERLSISLPFNSWADDSDEDSIVKVDCIKWVRLDSIIIGCFKKNADGMEDSYLLQVIRSKGGKITDAAASE LVVLSFYDLFMELIDDIVPFGSGPYLFFSYLEQSALAIVANRKNTDQHIMLLGWSVGDGEAETAVLEIDRDTYQPKIELQADGEDNLIMGLSVDKVSIYG NIKVEVGLDDHKELPPLCVLMCITLEGKLVMFHVASGTGNTVPSEADSSVHDEEDDVPFGLSVGRDDHNLSSAFGDEKTGKLALGSQLQGSVEPASGNIK VSGIPSEKDLKPSDTEDGSTEVVSEKNPCVDTPANNMGKYVAKHESVANEQPRVHVPEMQQGIDGQQLLPFGQQTMNFNHSSFSTKVSGDPGSRTVEVER SEGQTSGAFETRTAPFSTKASQILPSQPVSTGVHNFIQPTKATPASGSSFSWGFSPQLQSSGKIFPEKSESKASLSYSATNKESGASVGAGNFVKNHTEK LVHLPDVSGQLASVIPAKPVQIGGLGVSSGVGKLESLPTIRSPQLSFQDGSALGSSLNQRPYAQKERAQSLSNAVPNMTRQFGSIQETVKELDILLEGIQ EKGGFRDACTVALRSSIEALETGIGALSRNCGNLKGMMDKQLEEIQHLLDKTIQVLARKTYMEGILRQTSDSKYWELWDRQKLSPELELKRQHILELNQG LTNKLVELERHLNTLELNQFGENDGNAGRLAVHNKYGTSRHRQSIHSLCNTTHSQIAAAEQLSDCLSKQMALLQVQSPVKQKNIKKELFETIGIPYDASF SSPQADKRDHASPSRRPIVSGSSTSKQQSRRRQSGASKASEPESSRRRRDSLDQNWTSFEPSKTTVKRMELQENNESKVKKSSMLMDRQRFGPHSLYGQD IPPVEDNVSIPWQSYGNKGMQYPLPEQVSRQKPTTFNWVNNPPMTLQGTGSGSAMLRGNSTTPLPGGSVTSPSVAQNYAKEIDSATRNEASGRAFGFEKL GSALIGESKLDQRYANVQNKLAPTTRSPSGLFSVQKPVEVRNSQSNMAPTSPAVADMKPGSESERRSPFGSVGLSAPNTLGRPSQSSNNDKGPSVGVTTP LTGSSSQTTNLSNIPSSVKALEPVMSGSRASPDSRSSLFQSAAFAAPSMPGPSQISFATNKTQPGDKVQPLGFSIQFPVSSSQTTSQSDVQSVPSATSAP VPPPARGISMSSSMAINDGIQKAFSVSSATVPPTVSSAGSLSFSPAKIQSSFSESPAKLFQGIKETASSLNLPQPTSVPPPKEVQHTGPVAASSATQIEL QAGPEKSSLPALQLGTTGDKPSSDQSLTSLDSAASAQESSIIEIPSPADKSGTKPDVIAVTTVQNVPSSKSEPSASHIPATVATVSLSSANLSPFGKISI STSSGPLGTEVPQVPQTLNLFQPPAFPTSSSGTKNEGLDVGGGGGEDEMDEEAPETSKTSELSLGSLGGFGIGSSPNPAVPRGNPFGSPFGSTETNSASS SFSMSVPSGELFKPASFSFPSPQPPQSPPQSSAFSGGFGSGAGAQVPAQQSAFGQPAQVGGGQQALGSVLGTFGQSRQLGAGLPVSGFGGGAAGAFGGFA NSSPPAGGGFASAATGGGFASMAKSGGGGGGFGGLGSAGGGGFGGGGGGFGGGGFGAAAAGSGGFGGGGAAGGFGGGGFGGVGASGGSGFGGFGSQQGGG GSGGVSSFGGQQQAGGGGSGGFSGFGGTGKPPELFTQMRK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G55540		EMB1011	Nuclear pore complex protein (...		Lus10010334 [exp]	0	1
AT1G55540		EMB1011	Nuclear pore complex protein (...		Lus10021859 [exp]	1.0	0.9491
AT4G17610			tRNA/rRNA methyltransferase (S...		Lus10011019 [exp]	4.5	0.9195
AT1G63700		EMB71, MAPKKK4,...	YODA, MAP KINASE KINASE KINASE...		Lus10038858 [exp]	8.1	0.9040
AT3G46960			RNA helicase, ATP-dependent, S...		Lus10017528 [exp]	12.6	0.9127
AT1G50140			P-loop containing nucleoside t...		Lus10013429 [exp]	13.2	0.9064
AT1G15750		TPL, WSIP1	WUS-INTERACTING PROTEIN 1, TOP...		Lus10023119 [exp]	14.0	0.8919
AT1G64790		ILA	ILITYHIA (.1.2)		Lus10003101 [exp]	16.2	0.9094
AT3G20540		PolIB, POLGAMMA...	polymerase I B, polymerase gam...		Lus10019619 [exp]	22.0	0.8998
AT1G33330			Class I peptide chain release ...		Lus10008558 [exp]	23.3	0.8443
AT5G51660		CPSF160, ATCPSF...	cleavage and polyadenylation s...		Lus10031692 [exp]	27.9	0.9012

Compare expression of checked genes

Lus10010334 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.