Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G38830 669 / 0 Cysteinyl-tRNA synthetase, class Ia family protein (.1) AT2G31170 611 / 0 FIONA, SYCOARATH ,SYCO ARATH cysteinyl t-RNA synthetase, FIONA, Cysteinyl-tRNA synthetase, class Ia family protein (.1.2) AT3G56300 535 / 0 Cysteinyl-tRNA synthetase, class Ia family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021862 [exp] 1020 / 0 AT5G38830 686 / 0.0 Cysteinyl-tRNA synthetase, class Ia family protein (.1) Lus10041428 [exp] 1011 / 0 AT5G38830 687 / 0.0 Cysteinyl-tRNA synthetase, class Ia family protein (.1) Lus10034343 [exp] 1009 / 0 AT5G38830 686 / 0.0 Cysteinyl-tRNA synthetase, class Ia family protein (.1) Lus10001921 [exp] 568 / 0 AT2G31170 831 / 0.0 cysteinyl t-RNA synthetase, FIONA, Cysteinyl-tRNA synthetase, class Ia family protein (.1.2) Lus10001953 [exp] 236 / 2e-73 AT2G31170 305 / 5e-102 cysteinyl t-RNA synthetase, FIONA, Cysteinyl-tRNA synthetase, class Ia family protein (.1.2) Lus10001954 [exp] 196 / 9e-56 AT4G32120 489 / 8e-172 Galactosyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G122500 [exp] 749 / 0 AT5G38830 682 / 0.0 Cysteinyl-tRNA synthetase, class Ia family protein (.1) Potri.018G024300 [exp] 601 / 0 AT2G31170 856 / 0.0 cysteinyl t-RNA synthetase, FIONA, Cysteinyl-tRNA synthetase, class Ia family protein (.1.2) Potri.004G226700 [exp] 43 / 0.0005 AT1G09620 1647 / 0.0 ATP binding;leucine-tRNA ligases;aminoacyl-tRNA ligases;nucleotide binding;ATP binding;aminoacyl-tRNA ligases (.1) Potri.008G122901 [exp] 0 / 1 AT5G38830 0 / 1 Cysteinyl-tRNA synthetase, class Ia family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0039 [flax] [poplar] HUP PF01406 [flax] [poplar] tRNA-synt_1e tRNA synthetases class I (C) catalytic domain
Representative CDS sequence Show only first row Show all	>Lus10010336 pacid=23169498 polypeptide=Lus10010336 locus=Lus10010336.g ID=Lus10010336.BGIv1.0 annot-version=v1.0 ATGGCGTTCAGGTTGTACAATACAATGAGTAAAACTGTGGAGCTTTTCAAGCCCATCGTTCCTGGCAAAGTTGGCATGTACGTGTGTGGTGTAACTGCGT ACGACCTAAGCCACATTGGACATGCTCGTGCTGCGGTAGTATTTGATGTTCTCTTCAGGTACCTGCAGCACTTGGGTTATGAAGTTACCTATGTGAGGAA CTTTACGGATATTGATGACAAGATAATTAAGCGTGCAAATGAACTTAATGAAGATCCCTTGTCCTTGAGTAATCGCTTCTGTGAAGAGTATCTTCTTGAC ATGGGAAGGCTGCAGTGCCTGCCTCCAACTCATCAGCCACGGGTAACTGAACACATGGACAATATCAAGAACATGATCATGCAGATTATGCAAAATGGCT GTGCATATGCTGTTGAAGGAGATGTGTTCTTTGCGGTTGAGAAGTCACCAAACTACGGGCAGTTATCCGGGAGGAAGTTGGAGGACAACAGAGCTGGTGA ACGTGTTGCAGTTGACTTAAGAAAGCATAATCCTGCAGACTTTGCTCTATGGAAGGCTGCAAAGGAGCATGAACCAAGATGGGACAGCTCATGGGGCCCG GGAAGACCAGGATGGCATATCGAATGCAGTGCAATGAGTGCACACTATCTTTCTTTCAAATTTGATATTCACGGTGGAGGAAGCGATTTGATCTTCCCAC ATCACGAAAATGAAGTAGCTCAAAGCGGTGCTGCTTGCAGCGAAAGCAAAATAAATTTTTGGATTCACAATGGGCATGTCACCAATAATCATTTGAAGAT GTCAAAATCATTGGGCAATTTTTTCACCATTCGTCAGATTATTGAAAAGTACCATCCACTGGCTTTGCGGATGTTCTTGATGAGTGCTCACTATCGTTCC CCGCTTAATTACTCCATTGGTCAGATAGAAAAGGCGGCGGATACAGTTTCTTACATTTATCAGACGTTGCACGACTGCGAGGTTGCTTTATTACCATTTC AAGAAAGCTTAAAGGAAGAAAGTACCACAAAGAATGAAAAGAAAGACAAGACCATCCAGAAGGCCCAAGAATGCATCAGTAGCCTGCAAAATGATTTTGA AGCTAAAATGTCTGAGGATTTAAACACGTCACATGTGTTAACTGGTGCTTTCCATGAAGCTTTGAAGTTCCTAAATGCTAATTTAAGCCCTCCAAAGAAG AAGCAGCAGAAGCAACAGCTAACTTCATTAGCCAAGTACCTTGGTGAATTAGCAAGAGAAATTGAGAGGGTACTTAGGATTCTGGGCTTGCTGCCAACTT GCAGCTATAGCGAGGTTTTGCAGCAGTTCAAAGAGAAGGCATTGATTAGGGCTGAACTGGAGGAAGAGGATGTTGGTCGGTTGATTGAAGATAGGAAAGC TGCAAGGAAAAATAAGGAGTTTGCAAGAAGTGATGAAATCAGAGCTGATTTAGCTAAGAAGGGAATTGCACTGATGGATGTCGGGACTGAAACAGTTTGG AGACCATGTGTTCCTGCCGTGCAAGAAGAAGAGGCAGCTGTAACAGCAGCAGTAGAGGCAGTAGGGTTAGAGGAGCAGAGTTCATCAACGTCAGTGCCAA GTTAG
AA sequence Show only first row Show all	>Lus10010336 pacid=23169498 polypeptide=Lus10010336 locus=Lus10010336.g ID=Lus10010336.BGIv1.0 annot-version=v1.0 MAFRLYNTMSKTVELFKPIVPGKVGMYVCGVTAYDLSHIGHARAAVVFDVLFRYLQHLGYEVTYVRNFTDIDDKIIKRANELNEDPLSLSNRFCEEYLLD MGRLQCLPPTHQPRVTEHMDNIKNMIMQIMQNGCAYAVEGDVFFAVEKSPNYGQLSGRKLEDNRAGERVAVDLRKHNPADFALWKAAKEHEPRWDSSWGP GRPGWHIECSAMSAHYLSFKFDIHGGGSDLIFPHHENEVAQSGAACSESKINFWIHNGHVTNNHLKMSKSLGNFFTIRQIIEKYHPLALRMFLMSAHYRS PLNYSIGQIEKAADTVSYIYQTLHDCEVALLPFQESLKEESTTKNEKKDKTIQKAQECISSLQNDFEAKMSEDLNTSHVLTGAFHEALKFLNANLSPPKK KQQKQQLTSLAKYLGELAREIERVLRILGLLPTCSYSEVLQQFKEKALIRAELEEEDVGRLIEDRKAARKNKEFARSDEIRADLAKKGIALMDVGTETVW RPCVPAVQEEEAAVTAAVEAVGLEEQSSSTSVPS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G38830			Cysteinyl-tRNA synthetase, cla...		Lus10010336 [exp]	0	1
AT3G59760		ATCS-C, OASC	ARABIDOPSIS THALIANA CYSTEINSY...		Lus10027056 [exp]	2.8	0.8589
AT3G44160			Outer membrane OMP85 family pr...		Lus10013360 [exp]	4.9	0.8527
AT1G08530			unknown protein		Lus10021985 [exp]	5.7	0.7997
AT1G71920		HISN6B	HISTIDINE BIOSYNTHESIS 6B (.1....		Lus10013699 [exp]	7.3	0.8328
AT5G59560		SRR1	SENSITIVITY TO RED LIGHT REDUC...		Lus10024163 [exp]	8.5	0.7880
AT2G31170		FIONA, SYCOARAT...	cysteinyl t-RNA synthetase, FI...		Lus10001921 [exp]	12.0	0.8297
AT1G71260		WHY2, ATWHY2	WHIRLY 2 (.1)		Lus10035067 [exp]	13.6	0.7924
AT1G17880		ATBTF3	basic transcription factor 3 (...		Lus10039661 [exp]	17.0	0.8065
AT1G09010			glycoside hydrolase family 2 p...		Lus10004484 [exp]	19.6	0.8186
AT3G25890	AP2_ERF	CRF11	cytokinin response factor 11, ...		Lus10035018 [exp]	20.7	0.8235

Compare expression of checked genes

Lus10010336 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.