Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G04420 606 / 0 NAD(P)-linked oxidoreductase superfamily protein (.1) AT1G04690 110 / 3e-27 KV-BETA1, KAB1 potassium channel beta subunit 1 (.1) AT1G60710 106 / 1e-25 ATB2 NAD(P)-linked oxidoreductase superfamily protein (.1) AT1G60680 104 / 1e-24 AGD2 NAD(P)-linked oxidoreductase superfamily protein (.1) AT1G60730 103 / 3e-24 NAD(P)-linked oxidoreductase superfamily protein (.1), NAD(P)-linked oxidoreductase superfamily protein (.2), NAD(P)-linked oxidoreductase superfamily protein (.3) AT1G60690 102 / 5e-24 NAD(P)-linked oxidoreductase superfamily protein (.1) AT1G10810 100 / 2e-23 NAD(P)-linked oxidoreductase superfamily protein (.1) AT1G60750 98 / 2e-22 NAD(P)-linked oxidoreductase superfamily protein (.1) AT1G06690 95 / 3e-21 NAD(P)-linked oxidoreductase superfamily protein (.1) AT5G53580 77 / 2e-15 AtPLR1 pyridoxal reductase 1, NAD(P)-linked oxidoreductase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028045 [exp] 301 / 4e-100 AT1G04420 286 / 2e-94 NAD(P)-linked oxidoreductase superfamily protein (.1) Lus10021866 [exp] 216 / 9e-70 AT1G04420 169 / 9e-52 NAD(P)-linked oxidoreductase superfamily protein (.1) Lus10003751 [exp] 187 / 2e-56 AT1G04420 174 / 1e-51 NAD(P)-linked oxidoreductase superfamily protein (.1) Lus10021867 [exp] 134 / 9e-39 ND 43 / 3e-06 Lus10023701 [exp] 117 / 2e-29 AT1G60690 527 / 0.0 NAD(P)-linked oxidoreductase superfamily protein (.1) Lus10023674 [exp] 111 / 2e-27 AT1G04690 619 / 0.0 potassium channel beta subunit 1 (.1) Lus10011751 [exp] 110 / 5e-27 AT1G04690 619 / 0.0 potassium channel beta subunit 1 (.1) Lus10029615 [exp] 109 / 1e-26 AT1G60710 399 / 2e-139 NAD(P)-linked oxidoreductase superfamily protein (.1) Lus10041184 [exp] 100 / 2e-23 AT1G60690 374 / 1e-129 NAD(P)-linked oxidoreductase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G167400 [exp] 634 / 0 AT1G04420 612 / 0.0 NAD(P)-linked oxidoreductase superfamily protein (.1) Potri.015G042100 [exp] 311 / 1e-103 AT1G04420 294 / 4e-97 NAD(P)-linked oxidoreductase superfamily protein (.1) Potri.001G052100 [exp] 108 / 3e-26 AT1G04690 602 / 0.0 potassium channel beta subunit 1 (.1) Potri.014G147700 [exp] 100 / 2e-23 AT1G60710 559 / 0.0 NAD(P)-linked oxidoreductase superfamily protein (.1) Potri.013G040000 [exp] 99 / 6e-23 AT1G60710 376 / 2e-130 NAD(P)-linked oxidoreductase superfamily protein (.1) Potri.013G040100 [exp] 95 / 1e-21 AT1G60710 369 / 1e-127 NAD(P)-linked oxidoreductase superfamily protein (.1) Potri.008G158300 [exp] 92 / 2e-20 AT1G60680 389 / 2e-135 NAD(P)-linked oxidoreductase superfamily protein (.1) Potri.005G207000 [exp] 90 / 9e-20 AT1G06690 589 / 0.0 NAD(P)-linked oxidoreductase superfamily protein (.1) Potri.005G207100 [exp] 90 / 1e-19 AT1G06690 526 / 0.0 NAD(P)-linked oxidoreductase superfamily protein (.1) Potri.002G234201 [exp] 89 / 2e-19 AT1G60710 547 / 0.0 NAD(P)-linked oxidoreductase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00248 [flax] [poplar] Aldo_ket_red Aldo/keto reductase family
Representative CDS sequence Show only first row Show all	>Lus10010340 pacid=23169533 polypeptide=Lus10010340 locus=Lus10010340.g ID=Lus10010340.BGIv1.0 annot-version=v1.0 ATGTCGTCCGGCATTTCCTTCTGTGCCACCACGTTGCCGGTGACGAAATATGGCGCATTCTCAACTCGCCGGCCATCTCCCCATCGCCTGGCTGGCCATT CCGGACTCTCTAGGCCGAGATTCCGACCGAGTGTTACTGCCGCTCTTGCTCAAAAGACCGCGTTACAGTACAGGAAACTAGGCGACTCCGATCTCGAAAT CAGCGAGATCACTATCGGAACAATGACATTCGGGGAGCAGAACACGGAGAAAGAAGCTCACGAGATTCTCAGTTATGCATTTGAAAGCGGCATCAATATC CTGGATACTGCAGAAATTTACCCTGTACCGATGAAGAAGGAAACACAAGGTAAGACGGATCTCTATGTCAGTAGCTGGATGAAGTCTCGACCACGGGATA AGGTAATTTTGGCTACAAAAGTAGCTGGATATTCAGAGCGGTCAACTTTTCTCCGGGACAATGCAGAGGTAGTGAGGGTTGATGCTGCTAATATCAAAGA GAGCGTGGAGAAAAGCCTGAAGCGTCTTGGGACTGATTACATCGATCTGCTGCAGATTCACTGGCCAGATCGCTATGTACCACTATTTGGCGAGTTCTTT TATGATTATTCAAAATGGAGGCCAAGTGTGTCCTTTGAAGAACAACTTCAGGCGTTTCAAGAACTAGTCGATGAAGGAAAGGTGCGGTATATCGGTGTAT CAAATGAGACATCCTTTGGAGTCATGGAGTTCGTTCATGCTGCCAAAGTTGGAGGATTCCCAAAGATCGTCAGCATCCAGAACAGCTATAGTTTGCTGGT GAGGTGTCCGTTTGAGATTGATTTATCTGAAGTTTGCCACCCAAACAACTGCAACATTGGCCTTCTAGCTTACTCTCCCCTGGCTGGTGGAGCGCTCTCG GGGAAATACTTGGATTTGGATTCCGAAGCTGCCAAGAAAGGGAGATTCAATCTCTTCCCAGGTTACATGGCAAGATACAGAGATTCACTTGCGAGGGAAG CGACAGTAGAGTACATCGAAATGGGGAAGAAGCACGGTTTAACGCCTGTTCAGCTGGCCCTAGGATTCGTTCGTGATCGTCCTTTTGTCACAAGTTCTAT CGTGGGGGCGACCTCTGTTGGCCAACTTAAAGAGGACATTGATGCTTTTCTGGGCACTGAGCGACCTTTGTCACCCGAAGTAGTGGCGGATATCGAGAGC ATATTCAAGAGATACAAAGATCCGGCCATCCTGTAG
AA sequence Show only first row Show all	>Lus10010340 pacid=23169533 polypeptide=Lus10010340 locus=Lus10010340.g ID=Lus10010340.BGIv1.0 annot-version=v1.0 MSSGISFCATTLPVTKYGAFSTRRPSPHRLAGHSGLSRPRFRPSVTAALAQKTALQYRKLGDSDLEISEITIGTMTFGEQNTEKEAHEILSYAFESGINI LDTAEIYPVPMKKETQGKTDLYVSSWMKSRPRDKVILATKVAGYSERSTFLRDNAEVVRVDAANIKESVEKSLKRLGTDYIDLLQIHWPDRYVPLFGEFF YDYSKWRPSVSFEEQLQAFQELVDEGKVRYIGVSNETSFGVMEFVHAAKVGGFPKIVSIQNSYSLLVRCPFEIDLSEVCHPNNCNIGLLAYSPLAGGALS GKYLDLDSEAAKKGRFNLFPGYMARYRDSLAREATVEYIEMGKKHGLTPVQLALGFVRDRPFVTSSIVGATSVGQLKEDIDAFLGTERPLSPEVVADIES IFKRYKDPAIL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G04420			NAD(P)-linked oxidoreductase s...		Lus10010340 [exp]	0	1
AT1G68590			Ribosomal protein PSRP-3/Ycf65...		Lus10021693 [exp]	5.2	0.9268
AT1G22700			Tetratricopeptide repeat (TPR)...		Lus10021972 [exp]	5.8	0.9252
AT3G52380		CP33, PDE322	PIGMENT DEFECTIVE 322, chlorop...		Lus10016174 [exp]	7.9	0.9222
AT4G14890		FdC2	ferredoxin C 2, 2Fe-2S ferredo...		Lus10006116 [exp]	8.9	0.9200
AT3G10230		AtLCY, LYC	lycopene cyclase (.1.2)		Lus10027278 [exp]	9.2	0.9162
AT1G23740		AOR	alkenal/one oxidoreductase, Ox...		Lus10030615 [exp]	11.2	0.9123
AT3G55280		RPL23A2, RPL23A...	RIBOSOMAL PROTEIN L23A2, ribos...		Lus10024430 [exp]	12.0	0.9127
AT3G54210			Ribosomal protein L17 family p...		Lus10007002 [exp]	13.8	0.9178
AT1G32550		FdC1	ferredoxin C 1, 2Fe-2S ferredo...		Lus10004576 [exp]	17.9	0.9110
AT4G02790		EMB3129	EMBRYO DEFECTIVE 3129, GTP-bin...		Lus10014672 [exp]	20.7	0.9095

Compare expression of checked genes

Lus10010340 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.