Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G44120 379 / 3e-127 ATCRA1, CRU1, CRA1 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) AT1G03890 332 / 1e-109 RmlC-like cupins superfamily protein (.1) AT1G03880 322 / 2e-105 CRB, CRU2 CRUCIFERIN B, cruciferin 2 (.1) AT4G28520 254 / 3e-78 CRC, CRU3 CRUCIFERIN C, cruciferin 3 (.1.2.3.4) AT2G28680 110 / 2e-26 RmlC-like cupins superfamily protein (.1) AT2G28490 59 / 4e-09 RmlC-like cupins superfamily protein (.1) AT2G18540 59 / 4e-09 RmlC-like cupins superfamily protein (.1) AT4G36700 57 / 2e-08 RmlC-like cupins superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021868 [exp] 680 / 0 AT5G44120 330 / 2e-109 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) Lus10021180 [exp] 608 / 0 AT5G44120 377 / 1e-126 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) Lus10021179 [exp] 600 / 0 AT5G44120 385 / 1e-129 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) Lus10011817 [exp] 572 / 0 AT5G44120 358 / 2e-119 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) Lus10011816 [exp] 560 / 0 AT5G44120 357 / 1e-119 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) Lus10022927 [exp] 433 / 2e-148 AT5G44120 424 / 5e-145 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) Lus10024891 [exp] 431 / 1e-147 AT5G44120 428 / 1e-146 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) Lus10024889 [exp] 429 / 1e-146 AT5G44120 407 / 1e-138 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) Lus10022929 [exp] 374 / 2e-125 AT5G44120 340 / 9e-113 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G308050 [exp] 543 / 0 AT5G44120 392 / 1e-132 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) Potri.019G004500 [exp] 540 / 0 AT5G44120 386 / 3e-130 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) Potri.019G004400 [exp] 539 / 0 AT5G44120 388 / 5e-131 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) Potri.019G004300 [exp] 532 / 0 AT5G44120 385 / 7e-130 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) Potri.019G004200 [exp] 531 / 0 AT5G44120 383 / 6e-129 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) Potri.005G224700 [exp] 430 / 1e-147 AT5G44120 394 / 7e-134 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) Potri.002G038100 [exp] 407 / 2e-138 AT5G44120 400 / 9e-136 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) Potri.005G224400 [exp] 329 / 5e-108 AT5G44120 280 / 4e-89 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) Potri.007G047200 [exp] 106 / 3e-25 AT2G28680 561 / 0.0 RmlC-like cupins superfamily protein (.1) Potri.008G102900 [exp] 102 / 7e-24 AT2G28680 543 / 0.0 RmlC-like cupins superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF00190 [flax] [poplar] Cupin_1 Cupin
Representative CDS sequence Show only first row Show all	>Lus10010341 pacid=23169547 polypeptide=Lus10010341 locus=Lus10010341.g ID=Lus10010341.BGIv1.0 annot-version=v1.0 ATGGCTTCTTCTTCTTCTCTGCTCTCCTTCGCGATCCTCTCCCTCGTCCTCTTTCACACCTGCTCGGGAGTCCAAATTGGACTCCGGAGATTACGTTTTC CGCAGCAGAACCAAGAGTGCCAATTCCGGCGCATCAACGCCCAGGAGCCCCACCGGAGGGTCGCCTCCGAGGCCGGCGTCACTGAGATTTGGGACGAGAA CGACGACCAGTTCCGATGCGCCGGAGTGGCTGCTCTCAGACACACCATCGAGCAGAGAGGACTCCTCTTGCCATCTTACTCCAATGCCCCCAAACTCATC TACGTTGACCAAGGCAGGAGAGGGTATCACGGAGCTGCTATCCCGGGCTGCCCCGAGACATACCAATCGCAGGAGGAGTCGGGTTCCCGCCAAGACCCGA GACAGGGTTCCAGAGACGAACACCAGAAGGTCCGTAAGATACGAGAAGGAGATATCATAGCAATTCCGGCTGGAGCTGCTGATTGGTTCTACAACGACGC TCAATCTCCTCTTGTCCTCGTCCAAATCTTCGACACCAGCAACTCCGACAACCAGCTCGACCAGAACTTCAGAAAATTCTTCCTGGCAGGGAACCCGCAA AGGCAAATCCAAGGGCAGAGACGGGACCAATCGTCGTCGCCGGCGCACCTGTACGGGAGAGGCGGCGAGTGGTCGTCTCGAAGAGGAGGCCAGCAGGAAC AACAACAACGTTCTGGAAACATCTTCCAAGCATTCGACGAGAAGTTCTTGGCGGAGGCTTTCAACATCGACACTGACCTTGCGAGGAGGATCAAGAGCCA GAACGACAACAGAGGAATTATCGTCAGAGTCGAGGAACAGCTTGAGTTCCTTAGCCCCGAGTTCAGCCAGCAGGAAGAGCGTGAATTCCGAGGCAGCAGC AGATACTCCAACGGCATTGAGGAAACATACTGCTCCGCCAAGTTGAAGCAGAACATCAACGACCCTTCGCGCGCCGACATCTTCAACCCACGCGCCGGTC GCCTCACCACCGTTAACCGATTCAGCCTTCCTATCCTCCGTTACCTCAAGCTCAGCGCCCAAAAGGGCCATCTCTACCGAAACGCAATCATGGCGCCGCA CTGGAACATGAATGCGCACAGCATCAACTACATAACAAGGGGGAGCGGGCAGGTCCAGATAGTGAACGAGAACGGGGAGAGCGTGTTCGACGGACAAGTT GAAGAAGGGCAGATAATCACTTCGCCGCAGAACTTCGCGGTGGTGAAGAGGGCAGGAAACGAAGGGCTGGAGTGGATCTCGTTCAAGACCAACGACAACG CCAAGATCAACCAGATCGCGGGGCGGGCTTCCACATTTCGGGCGATTCCCCAGGACGTGATCGCTAACTCGTTCGGGATTTCGTTGGAAGAGGCTCGACG CATCAAGTTCAACCGGGACGAGACTGGGATCTTTAGCCCTAGCACCAGGTCCCGTTTCGGGAGAAACTGA
AA sequence Show only first row Show all	>Lus10010341 pacid=23169547 polypeptide=Lus10010341 locus=Lus10010341.g ID=Lus10010341.BGIv1.0 annot-version=v1.0 MASSSSLLSFAILSLVLFHTCSGVQIGLRRLRFPQQNQECQFRRINAQEPHRRVASEAGVTEIWDENDDQFRCAGVAALRHTIEQRGLLLPSYSNAPKLI YVDQGRRGYHGAAIPGCPETYQSQEESGSRQDPRQGSRDEHQKVRKIREGDIIAIPAGAADWFYNDAQSPLVLVQIFDTSNSDNQLDQNFRKFFLAGNPQ RQIQGQRRDQSSSPAHLYGRGGEWSSRRGGQQEQQQRSGNIFQAFDEKFLAEAFNIDTDLARRIKSQNDNRGIIVRVEEQLEFLSPEFSQQEEREFRGSS RYSNGIEETYCSAKLKQNINDPSRADIFNPRAGRLTTVNRFSLPILRYLKLSAQKGHLYRNAIMAPHWNMNAHSINYITRGSGQVQIVNENGESVFDGQV EEGQIITSPQNFAVVKRAGNEGLEWISFKTNDNAKINQIAGRASTFRAIPQDVIANSFGISLEEARRIKFNRDETGIFSPSTRSRFGRN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G44120		ATCRA1, CRU1, C...	CRUCIFERINA, RmlC-like cupins ...		Lus10010341 [exp]	0	1
					Lus10024618 [exp]	1.4	0.9604
					Lus10039765 [exp]	2.8	0.9129
AT4G13230			Late embryogenesis abundant pr...		Lus10022822 [exp]	3.5	0.9577
AT5G20610			unknown protein		Lus10025003 [exp]	4.2	0.9577
					Lus10008327 [exp]	4.9	0.9577
AT2G27110	FAR1_related	FRS3	FAR1-related sequence 3 (.1.2....		Lus10008762 [exp]	5.5	0.9577
					Lus10010697 [exp]	6.0	0.9577
AT5G12480		CPK7	calmodulin-domain protein kina...		Lus10026300 [exp]	6.5	0.9367
AT3G04720		HEL, PR-4, PR4	HEVEIN-LIKE, pathogenesis-rela...		Lus10020252 [exp]	8.9	0.9005
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Lus10000190 [exp]	9.0	0.9085

Compare expression of checked genes

Lus10010341 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.