Plant FIBer expression Database

Lus10010342 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10036475
[exp]
818 / 0 ND /
Lus10018952
[exp]
115 / 2e-28 ND /
Lus10011266
[exp]
93 / 2e-20 ND /
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G100700
[exp]
756 / 0 ND /
Potri.019G076200
[exp]
134 / 2e-35 ND /
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF01702 TGT Queuine tRNA-ribosyltransferase
Representative CDS sequence
>Lus10010342 pacid=23169480 polypeptide=Lus10010342 locus=Lus10010342.g ID=Lus10010342.BGIv1.0 annot-version=v1.0
ATGGCGCTTCGTTTCGAGATTCTGGCGAGGTTCAATCGAGCTCGTGCAGCTCGAATGACGCTACCTCATTTTGTAGCTCAGACGCCATTGTTTATGCCTG
TAGGAACACAAGGGACAATTAAGGGATTGACAACTAGCCAGCTCGAGGAGATTGGTTGTCAAATAATCCTTGGGAACACCTACCATTTGGAGCTACGTCC
AACCTCTGAGTTAATAGATGAATTAGGTGGTCTTCATAAATTTATGAATTGGCCTAGAGCACTGCTTACTGATTCTGGTGGCTTCCAAATGGTCTCGCTG
TTGCATTTGGCTGATATAACCGAAAATGGAGTCACATTTCAGTCTCCAGTTGATGGTAAACCCATGCTTCTAACACCAGAGGAGTCTATTCAAATCCAAA
ACAGAATTGGTGCAGACATCATTATGGCTCTCGATGATGTGGTAAAGACCACCATCACTGGACCGCGAATCGAAGAAGCAATGTATCGGACCATTCGATG
GATAGACAGGTGCATTGCAGCTCATAAAAGGCCAGACGAGCAGAACTTATTCGCTATCGTTCAAGGCGGTCTGGATCCTGTGTTAAGGGATATATGTGTT
AAAGCTTTGACGAAAAGGAATCTACCAGGCTATGCCATTGGTGGCCTTGCTGGCGGGGAAGACAAAGATTCATTTTGGCGTGTTGTTGCTCAGTGTACGG
CTTCTTTACCTGAAGACAAACCGCGATATGTGATGGGTGTTGGTTATCCACTTGACATAGTGGTTTGCAGTGCTTTAGGTGCAGACATGTATGACTGTGT
GTATCCCACTCGCACTGCTCGTTTTGGAACAGCTCTTATACCAGAGGGAGTGCTCAAGCTTAAACACAAAGCAATGGCTGCAGATACTCGTCCAATCGAT
CCCACTTGCGCTTGCATGGTCTGCAAAACCTATTCGCGGGCATATATCCATAGCCTTGTCACCAAAGATGCTATGGGGTCGCAGCTTTTGTCATATCACA
ATCTGTACTACATGCTGCAGCTTAGTAGAGACTTACACTCTTCAATCCTCCATGGGAGGTTTCCAGAGTTCGTCTGCAACTTCCTGAAGAAAATGTTTCC
AAAAGGTGACGTCCCGGAGTGGGTGTGTAATGCCATGGAGGTCACAGGCGTCGACATCGCAGAATGTTGTTCGGAGGACTTAGTATTGCGGCGCTTTAGT
TCGAGCACTAGACTAACGAAAAAAGGCACAGAGTCTGCAATAGAAGACGGTTCTTCGAACGTTTAG
AA sequence
>Lus10010342 pacid=23169480 polypeptide=Lus10010342 locus=Lus10010342.g ID=Lus10010342.BGIv1.0 annot-version=v1.0
MALRFEILARFNRARAARMTLPHFVAQTPLFMPVGTQGTIKGLTTSQLEEIGCQIILGNTYHLELRPTSELIDELGGLHKFMNWPRALLTDSGGFQMVSL
LHLADITENGVTFQSPVDGKPMLLTPEESIQIQNRIGADIIMALDDVVKTTITGPRIEEAMYRTIRWIDRCIAAHKRPDEQNLFAIVQGGLDPVLRDICV
KALTKRNLPGYAIGGLAGGEDKDSFWRVVAQCTASLPEDKPRYVMGVGYPLDIVVCSALGADMYDCVYPTRTARFGTALIPEGVLKLKHKAMAADTRPID
PTCACMVCKTYSRAYIHSLVTKDAMGSQLLSYHNLYYMLQLSRDLHSSILHGRFPEFVCNFLKKMFPKGDVPEWVCNAMEVTGVDIAECCSEDLVLRRFS
SSTRLTKKGTESAIEDGSSNV

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
Lus10010342
[exp]
0 1
Lus10036475
[exp]
2.0 0.8434
AT4G31770 ATDBR1 ARABIDOPSIS THALIANA DEBRANCHI... Lus10026902
[exp]
6.2 0.8101
AT1G15420 unknown protein Lus10030351
[exp]
8.4 0.8637
AT5G13960 SDG33, KYP, SUV... SET DOMAIN PROTEIN 33, KRYPTON... Lus10002571
[exp]
9.6 0.8670
AT5G50340 ATP-dependent peptidases;nucle... Lus10038258
[exp]
9.6 0.7876
AT1G23280 MAK16 protein-related (.1) Lus10019648
[exp]
15.9 0.8214
AT1G09300 Metallopeptidase M24 family pr... Lus10031427
[exp]
16.2 0.8404
AT3G06778 Chaperone DnaJ-domain superfam... Lus10037711
[exp]
17.8 0.7460
AT1G80750 Ribosomal protein L30/L7 famil... Lus10040040
[exp]
18.7 0.8441
AT1G13690 ATE1 ATPase E1 (.1) Lus10026675
[exp]
19.0 0.7555

Lus10010342 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.