Plant FIBer expression Database

Lus10010343 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10036476
[exp]
181 / 4e-58 AT1G35210 42 / 3e-05 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G161700
[exp]
47 / 7e-07 AT1G35210 50 / 6e-08 unknown protein
Potri.002G100500
[exp]
40 / 0.0002 AT1G35210 47 / 4e-07 unknown protein
PFAM info
Representative CDS sequence
>Lus10010343 pacid=23169528 polypeptide=Lus10010343 locus=Lus10010343.g ID=Lus10010343.BGIv1.0 annot-version=v1.0
ATGCCAAACCAATTACCTCCTCCTCCGCGCCGCCATCGCCGCCGACCAGCCGCCGACAAAACGAGGTGCAGAAAGCATCGGGAGCAGCACCAGCCTCCAG
GTGTCTGCTCAGCCTGTCTCCGGGAAAAGCTCTCGCAGCTCCCATCAGTTGCCAGCTCATCATCGTCGTCCTACTACCGTACGGATGATACGTCATCGTC
TCCTTCGTCGGCTTCTTCGTACTATTCCTCTTCATCGTCTTCTTGCGATTCCTCCACGTGTACCTCCCCCAGGAAAGGCGGCGGCGGCGGAATGTTGATG
TCTCTGTCGTCTCGGTTGGTAGGGAAGAAGAATAATCGTGTGGAAACGACGTCGTTTATGATGTCGAAAAGCAGATCTATGGGTCTTGGCTGTCATGCAA
AAGGTGGTGGAGTTGAGGGGGGAAAGGTGGTCAAAGGGTTTTGGTCAAGAGTGCTCCGGCGAGGGAAGCGGTCGTCGACGACGGAGGAGGAGCAAAGGGG
TATAAGACCGCCGACAACTTTGGGCGGCCGTTCGATCACCATGCGGGACGTAGTCGTACTTCATGCATAG
AA sequence
>Lus10010343 pacid=23169528 polypeptide=Lus10010343 locus=Lus10010343.g ID=Lus10010343.BGIv1.0 annot-version=v1.0
MPNQLPPPPRRHRRRPAADKTRCRKHREQHQPPGVCSACLREKLSQLPSVASSSSSSYYRTDDTSSSPSSASSYYSSSSSSCDSSTCTSPRKGGGGGMLM
SLSSRLVGKKNNRVETTSFMMSKSRSMGLGCHAKGGGVEGGKVVKGFWSRVLRRGKRSSTTEEEQRGIRPPTTLGGRSITMRDVVVLHA

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G35210 unknown protein Lus10010343
[exp]
0 1
AT4G31940 CYP82C4 "cytochrome P450, family 82, s... Lus10022762
[exp]
2.6 0.9957
AT3G02840 ARM repeat superfamily protein... Lus10040125
[exp]
3.2 0.9949
AT5G39160 RmlC-like cupins superfamily p... Lus10032016
[exp]
3.5 0.9941
AT1G35210 unknown protein Lus10036476
[exp]
4.7 0.9910
AT5G37490 ARM repeat superfamily protein... Lus10001079
[exp]
6.0 0.9942
AT1G03220 Eukaryotic aspartyl protease f... Lus10010278
[exp]
7.1 0.9936
AT1G10370 GST30B, ATGSTU1... GLUTATHIONE S-TRANSFERASE U17,... Lus10030806
[exp]
7.3 0.9934
AT4G17500 AP2_ERF ATERF-1, AtERF1 ethylene responsive element bi... Lus10015296
[exp]
7.7 0.9857
AT4G37290 unknown protein Lus10019310
[exp]
7.9 0.9932
AT4G31940 CYP82C4 "cytochrome P450, family 82, s... Lus10025901
[exp]
8.5 0.9874

Lus10010343 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.