Plant FIBer expression Database

Lus10010344 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G11870 770 / 0 AtSRS, OVA7 ovule abortion 7, Seryl-tRNA synthetase (.1.2.3)
AT5G27470 238 / 2e-73 seryl-tRNA synthetase / serine--tRNA ligase (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10036477
[exp]
912 / 0 AT1G11870 783 / 0.0 ovule abortion 7, Seryl-tRNA synthetase (.1.2.3)
Lus10010211
[exp]
249 / 2e-77 AT5G27470 745 / 0.0 seryl-tRNA synthetase / serine--tRNA ligase (.1)
Lus10017409
[exp]
242 / 5e-75 AT5G27470 748 / 0.0 seryl-tRNA synthetase / serine--tRNA ligase (.1)
Lus10010212
[exp]
174 / 5e-50 AT5G27470 474 / 4e-167 seryl-tRNA synthetase / serine--tRNA ligase (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G100300
[exp]
795 / 0 AT1G11870 781 / 0.0 ovule abortion 7, Seryl-tRNA synthetase (.1.2.3)
Potri.005G094400
[exp]
244 / 1e-75 AT5G27470 731 / 0.0 seryl-tRNA synthetase / serine--tRNA ligase (.1)
Potri.007G070501
[exp]
169 / 3e-49 AT5G27470 380 / 3e-132 seryl-tRNA synthetase / serine--tRNA ligase (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0040 tRNA_synt_II PF00587 tRNA-synt_2b tRNA synthetase class II core domain (G, H, P, S and T)
CL0298 tRNA_bind_arm PF02403 Seryl_tRNA_N Seryl-tRNA synthetase N-terminal domain
Representative CDS sequence
>Lus10010344 pacid=23169481 polypeptide=Lus10010344 locus=Lus10010344.g ID=Lus10010344.BGIv1.0 annot-version=v1.0
ATGCTGCTGGTTCAAGCTCTTTCTTCGGCTGCGCCTGTTCAATCCACTCCGAAGAGACCCGAAACATTGGAAGTTGGGAAGCCGCAGTGGAAAGCTGCCA
TTGATTTCAAGTGGATAAGGGATAACAAAGAAGCAGTTGCTGCCAATATTAGGAGTAGGAACTCCAAGGCTCGTTTGGAGCTCGTCCTCGAGCTTTACGA
CGATATGTTAGCTGTTCAGAAGGAAGTTGAGAGGCTTCGTGCTGAAAGGAATGCAGTGGCAAACAAGATGAAAGGGAAACTGGAGCCATCGGAACGCCAG
AGATTCATCGAGGAAGGAAAGAATTTAAAGGAAGCACTGATAAGTTTGGAGGAAGATCTGGTTAAGCTTAGTGATGAGCTTCATCAAGAAGCACAATCTA
TTCCTAACATGACTCATCCAGATGTTCCCATAGGAGGGGAGGATTCTTCATCTGTGAGAAAATTGGTTGGAAGCCCGAAAGAATTCAGCTTTCCTATCAA
GGACCACCTTCAACTTGGGAAAGAGCTTGATTTATTTGATTTTGATGCTGCTGCAGAGGTCAGTGGATCGAAGTTCTACTATCTGAAGAATGAAGCAGTG
TTACTAGAAATGGCCCTGGTCAATTGGACCCTTTCTCAAGTGATGAAAAAAGGCTTTACGCCGCTGATAACCCCAGAAATTGTGAGGTCGTCCATTGTTG
AAAAGTGTGGCTTTCAGCCTCGTGGAGATAATACCCAGGTTTACTCAATTGAGGGTAGTGATCAATGCCTTATCGGCACAGCAGAGATTCCCGTCGGAGG
AATTCATATGGATACTATACTTGCCGAATCAACCTTGCCTTTGAAGTACGCGGCTTTTTCCCATTGCTTCCGCACAGAGGCCGGCGCTGCTGGAGCAGCA
ACTAGGGGTCTTTACCGAGTGCATCAATTCAGTAAAGTGGAAATGTTTGTTCTCTGTCGACCTGATGAAAGTGACGCCTACCACGAGGAGCTCATTCGAA
TCGAAGAAGACCTCTTCTCATCACTTGGCTTGCATTACAAAACTTTGGACATGGCCTCCGACGATTTAGGCGCACCTGCTTACCGTAAATTCGATGTCGA
GGCATGGATGCCTGGTCTAGGCCGGTACGGCGAGATATCGAGTGCATCCAATTGCACAGACTATCAAAGTCGCCGGTTAGGAATCCGATATCGACCTTCG
GAACCATCACCAACGACAACAATGAATACCAAGAAAGGAAAAGGCAACCTTGCCCCAACGAGGTTCGTACACACTTTGAATGCCACTGCTTGTGCTGTTC
CGAGAATGATGATATGCTTGCTGGAAACTCACCAGCAAGAGGATGGGAGTGTTGTTATCCCCGAGCCGCTTCGTCCGTTCATGGGCGGGATCGAGCTTGT
CACACCCAAGCATTAA
AA sequence
>Lus10010344 pacid=23169481 polypeptide=Lus10010344 locus=Lus10010344.g ID=Lus10010344.BGIv1.0 annot-version=v1.0
MLLVQALSSAAPVQSTPKRPETLEVGKPQWKAAIDFKWIRDNKEAVAANIRSRNSKARLELVLELYDDMLAVQKEVERLRAERNAVANKMKGKLEPSERQ
RFIEEGKNLKEALISLEEDLVKLSDELHQEAQSIPNMTHPDVPIGGEDSSSVRKLVGSPKEFSFPIKDHLQLGKELDLFDFDAAAEVSGSKFYYLKNEAV
LLEMALVNWTLSQVMKKGFTPLITPEIVRSSIVEKCGFQPRGDNTQVYSIEGSDQCLIGTAEIPVGGIHMDTILAESTLPLKYAAFSHCFRTEAGAAGAA
TRGLYRVHQFSKVEMFVLCRPDESDAYHEELIRIEEDLFSSLGLHYKTLDMASDDLGAPAYRKFDVEAWMPGLGRYGEISSASNCTDYQSRRLGIRYRPS
EPSPTTTMNTKKGKGNLAPTRFVHTLNATACAVPRMMICLLETHQQEDGSVVIPEPLRPFMGGIELVTPKH

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G11870 AtSRS, OVA7 ovule abortion 7, Seryl-tRNA s... Lus10010344
[exp]
0 1
AT4G31210 DNA topoisomerase, type IA, co... Lus10026990
[exp]
8.2 0.8559
AT1G11870 AtSRS, OVA7 ovule abortion 7, Seryl-tRNA s... Lus10036477
[exp]
9.4 0.8380
AT3G13490 ATKRS-2, OVA5 OVULE ABORTION 5, ARABIDOPSIS ... Lus10010317
[exp]
14.6 0.8537
AT1G27510 Protein of unknown function (D... Lus10042125
[exp]
20.4 0.8052
AT1G73970 unknown protein Lus10036972
[exp]
22.2 0.8167
AT4G30720 PDE327 PIGMENT DEFECTIVE 327, FAD/NAD... Lus10022174
[exp]
22.4 0.8098
AT5G02860 Pentatricopeptide repeat (PPR)... Lus10013894
[exp]
23.2 0.8280
AT2G31400 GUN1 genomes uncoupled 1 (.1) Lus10022290
[exp]
24.6 0.8358
AT1G62780 unknown protein Lus10024592
[exp]
26.0 0.8428
AT2G41720 EMB2654 EMBRYO DEFECTIVE 2654, Tetratr... Lus10018075
[exp]
28.8 0.8025

Lus10010344 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.