Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G22450 139 / 2e-43 ATCOX6B2, COX6B CYTOCHROME C OXIDASE 6B2, cytochrome C oxidase 6B (.1) AT4G28060 135 / 2e-43 Cytochrome c oxidase, subunit Vib family protein (.1) AT5G57815 135 / 3e-43 Cytochrome c oxidase, subunit Vib family protein (.1) AT1G32710 71 / 2e-17 Cytochrome c oxidase, subunit Vib family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036478 [exp] 154 / 1e-50 AT1G22450 146 / 2e-46 CYTOCHROME C OXIDASE 6B2, cytochrome C oxidase 6B (.1) Lus10008716 [exp] 144 / 3e-45 AT1G22450 173 / 4e-55 CYTOCHROME C OXIDASE 6B2, cytochrome C oxidase 6B (.1) Lus10040123 [exp] 114 / 2e-34 AT1G22450 121 / 9e-36 CYTOCHROME C OXIDASE 6B2, cytochrome C oxidase 6B (.1) Lus10020941 [exp] 110 / 2e-31 AT1G22450 138 / 9e-41 CYTOCHROME C OXIDASE 6B2, cytochrome C oxidase 6B (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G162100 [exp] 145 / 7e-46 AT1G22450 152 / 4e-47 CYTOCHROME C OXIDASE 6B2, cytochrome C oxidase 6B (.1) Potri.018G099900 [exp] 139 / 9e-45 AT5G57815 147 / 3e-48 Cytochrome c oxidase, subunit Vib family protein (.1) Potri.002G100000 [exp] 113 / 3e-33 AT1G22450 123 / 2e-35 CYTOCHROME C OXIDASE 6B2, cytochrome C oxidase 6B (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0351 [flax] [poplar] CHCH PF02297 [flax] [poplar] COX6B Cytochrome oxidase c subunit VIb
Representative CDS sequence Show only first row Show all	>Lus10010345 pacid=23169489 polypeptide=Lus10010345 locus=Lus10010345.g ID=Lus10010345.BGIv1.0 annot-version=v1.0 ATGGCCGATCTTGCCACTGCTGACGCTCTCTCCTCTCTCGAGCTGAAGACAGCACCAGCTGATTACCGTTTCCCGACGACCAACCAAACAAGGCACTGCT TTACTCGTTATATTGAGTTCCATAGGTGCGTTGCTGCAAAGGGAGAAGATGCTTCAGACTGCCAGAAGTTCTCCAAATACTATCGCTCTCTTTGCCCTGG TGAATGGGTGGAGAAATGGAATGAGCAGAGGGAGAATGGCACGTTTGCAGGACCTCTGTAG
AA sequence Show only first row Show all	>Lus10010345 pacid=23169489 polypeptide=Lus10010345 locus=Lus10010345.g ID=Lus10010345.BGIv1.0 annot-version=v1.0 MADLATADALSSLELKTAPADYRFPTTNQTRHCFTRYIEFHRCVAAKGEDASDCQKFSKYYRSLCPGEWVEKWNEQRENGTFAGPL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G22450		ATCOX6B2, COX6B	CYTOCHROME C OXIDASE 6B2, cyto...		Lus10010345 [exp]	0	1
AT2G21870		MGP1	MALE GAMETOPHYTE DEFECTIVE 1, ...		Lus10005794 [exp]	1.0	0.8913
AT1G22450		ATCOX6B2, COX6B	CYTOCHROME C OXIDASE 6B2, cyto...		Lus10036478 [exp]	4.9	0.8422
AT5G47890			NADH-ubiquinone oxidoreductase...		Lus10040122 [exp]	6.7	0.8425
AT5G51510			unknown protein		Lus10038916 [exp]	7.3	0.7794
AT4G27745			Yippee family putative zinc-bi...		Lus10033226 [exp]	7.7	0.8508
AT5G18900			2-oxoglutarate (2OG) and Fe(II...		Lus10012014 [exp]	8.8	0.8186
AT3G25220		FKBP15-1	FK506-binding protein 15 kD-1 ...		Lus10002339 [exp]	10.2	0.8144
AT2G38760		ANN3, ANNAT3	annexin 3 (.1)		Lus10039550 [exp]	17.3	0.8354
AT5G09430			alpha/beta-Hydrolases superfam...		Lus10033451 [exp]	20.0	0.8505
AT1G71190		TTN4, SAG18	senescence associated gene 18 ...		Lus10001354 [exp]	20.1	0.7932

Compare expression of checked genes

Lus10010345 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.