Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G78310 89 / 9e-21 VQ motif-containing protein (.1) AT2G35230 53 / 8e-08 IKU1 HAIKU1, VQ motif-containing protein (.1.2) AT5G46780 50 / 3e-07 VQ motif-containing protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036479 [exp] 246 / 1e-81 AT1G78310 153 / 6e-45 VQ motif-containing protein (.1) Lus10036480 [exp] 70 / 1e-13 AT1G78310 95 / 8e-22 VQ motif-containing protein (.1) Lus10010347 [exp] 52 / 1e-08 AT1G78310 78 / 4e-18 VQ motif-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G162300 [exp] 122 / 7e-33 AT1G78310 142 / 3e-40 VQ motif-containing protein (.1) Potri.002G099900 [exp] 120 / 3e-32 AT1G78310 141 / 2e-39 VQ motif-containing protein (.1) Potri.001G142400 [exp] 53 / 7e-08 AT2G35230 96 / 5e-22 HAIKU1, VQ motif-containing protein (.1.2) Potri.003G091800 [exp] 53 / 7e-08 AT1G32610 71 / 1e-13 hydroxyproline-rich glycoprotein family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05678 [flax] [poplar] VQ VQ motif
Representative CDS sequence Show only first row Show all	>Lus10010346 pacid=23169531 polypeptide=Lus10010346 locus=Lus10010346.g ID=Lus10010346.BGIv1.0 annot-version=v1.0 ATGGAGAATCATAATCATCCTAATCAGCAGCAGCAGTCGTCTTCATCATCTGGAGCTCTTCCGGATCACTCCAGATCAGATCATTATCTCAAAGGTCTCA ACAAGCTCTCCCACAAGATCTCCAAACCTACAACCACCACCGCCACCAAATCGAATCCTCCTCCTACTCCTCCGCTTCCTCTCCCTCCGCCATCGGAGCA GCAGCAGCAGCAGCTACCGCAACTTCCCGCCGCTCCGCAGCAGCAGAGTCAGCCGCCGGTTTACAACATCAACAAGAGCGATTTCCGCGATGTTGTCCAG AAACTCACCGGATCCCCTGCTCACGACCGCTCCGCCGCTCCTCCGCCGCCTATCCATCCGCCGAAACCGCAGAGCTCTCGGTTGCAGCGGATCCGTCCTC CTCCGCTTGCTCATTTGACTAATCGTCCTCCAGCTCCGACTCTGTTGTCGCCGCTGCCGCCGTTTCCGGCTGTCCACGTTGCTGCCGAGTCACCGGTCTC CGCTTACATGCGCTACCTCCACAGTTCGATGCCGCCTCCTCCTCCTCCTTCTGGAGCGTTCTCTCCTTTGGCTCCACTGGTTTCACCTCGCTGGAACAGC AACTTACATCCTAACAAATTAGGAGGAGGAGTCGCTTCTTCTCCGACTTCGCAACAGTTCCAGCTCCCGATCTCGCCGCTGCCGTTTGGCTGTTTGAATT CTCCGCGGGGAGCTTACCCGCAGTCTCCGACGGTGGTGCCTCCTGTTCCCAGCCCCAAATGGAAGAGAGTTTGA
AA sequence Show only first row Show all	>Lus10010346 pacid=23169531 polypeptide=Lus10010346 locus=Lus10010346.g ID=Lus10010346.BGIv1.0 annot-version=v1.0 MENHNHPNQQQQSSSSSGALPDHSRSDHYLKGLNKLSHKISKPTTTTATKSNPPPTPPLPLPPPSEQQQQQLPQLPAAPQQQSQPPVYNINKSDFRDVVQ KLTGSPAHDRSAAPPPPIHPPKPQSSRLQRIRPPPLAHLTNRPPAPTLLSPLPPFPAVHVAAESPVSAYMRYLHSSMPPPPPPSGAFSPLAPLVSPRWNS NLHPNKLGGGVASSPTSQQFQLPISPLPFGCLNSPRGAYPQSPTVVPPVPSPKWKRV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G78310			VQ motif-containing protein (....		Lus10010346 [exp]	0	1
AT1G78310			VQ motif-containing protein (....		Lus10036479 [exp]	1.4	0.8669
AT5G42190		SKP1B, ASK2	Arabidopsis SKP-like 2, E3 ubi...		Lus10017281 [exp]	2.8	0.8620
AT5G13430			Ubiquinol-cytochrome C reducta...		Lus10012580 [exp]	3.0	0.8464
AT3G24490	Trihelix		Alcohol dehydrogenase transcri...		Lus10033094 [exp]	3.9	0.8374
					Lus10031351 [exp]	5.7	0.8446
AT5G48385			FRIGIDA-like protein (.1)		Lus10001723 [exp]	6.3	0.7712
AT5G55160		ATSUMO2, SUMO2,...	small ubiquitin-like modifier ...		Lus10043185 [exp]	8.9	0.8094
AT4G12710			ARM repeat superfamily protein...		Lus10041090 [exp]	11.2	0.8230
AT5G66450			Phosphatidic acid phosphatase ...		Lus10028326 [exp]	11.4	0.7257
AT1G17730		CHMP1B, VPS46.1	CHARGED MULTIVESICULAR BODY PR...		Lus10037607 [exp]	12.0	0.7836

Compare expression of checked genes

Lus10010346 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.