Plant FIBer expression Database

Lus10010348 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G78310 44 / 3e-05 VQ motif-containing protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10036480
[exp]
101 / 2e-25 AT1G78310 95 / 8e-22 VQ motif-containing protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G162300
[exp]
54 / 2e-08 AT1G78310 142 / 3e-40 VQ motif-containing protein (.1)
Potri.002G099900
[exp]
46 / 5e-06 AT1G78310 141 / 2e-39 VQ motif-containing protein (.1)
PFAM info
Representative CDS sequence
>Lus10010348 pacid=23169561 polypeptide=Lus10010348 locus=Lus10010348.g ID=Lus10010348.BGIv1.0 annot-version=v1.0
ATGTTGCAACAACAGCCGCCGCCACCTTATCGTCCTCAACCGCCATCGTCTTTCAATAATCAGCAACAATTTCAATCTTCGGGGCCGCCTCCCAACGGAT
TCTTCCTCCCTCCGCATCCGCCGCCGCCAGGGCCTTTATCTCCAATGCCGCAGTATCCTCATCCTCCTCCTCCTGTGGCGGAGTCTCCTGTTTCAGCTTA
CATGAGGTACCTCCAGGACTCCATGGATCCAAATAAACAGCAGTTCTTCGGTGGATTCTCCCCACTTGCTCCTCTGGTTTCCCCTAGATGGAACAACAAC
CAGCAGCAGCAGCAGCAATTACTTCCATCGCCGCGTATGATGGCTCCTCCTCTTCCTCCTCCGCCGCAGCAGCAGCCGCCGCCGTTCCAGCATCCTATGT
CGCCTATGCCGTACGGGTTTTTGAACTCGCCACGGTCTCCTTATCCTATGTTCTCGCCCAGTATGCTGCTTTCTCCTTCGTCGTCATTTCCTCCACTTTC
GCCAACTATGCCTTTACATAGTCCAAGATGGCTGCTTTCCCCCAATCCTTTCCCTTTGTCTCCCACCATGCCTTTCCCAAGTCCCAGATGGAGAGGAATG
TGA
AA sequence
>Lus10010348 pacid=23169561 polypeptide=Lus10010348 locus=Lus10010348.g ID=Lus10010348.BGIv1.0 annot-version=v1.0
MLQQQPPPPYRPQPPSSFNNQQQFQSSGPPPNGFFLPPHPPPPGPLSPMPQYPHPPPPVAESPVSAYMRYLQDSMDPNKQQFFGGFSPLAPLVSPRWNNN
QQQQQQLLPSPRMMAPPLPPPPQQQPPPFQHPMSPMPYGFLNSPRSPYPMFSPSMLLSPSSSFPPLSPTMPLHSPRWLLSPNPFPLSPTMPFPSPRWRGM

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G78310 VQ motif-containing protein (.... Lus10010348
[exp]
0 1
AT1G78310 VQ motif-containing protein (.... Lus10036480
[exp]
1.0 0.9502
AT1G27730 C2H2ZnF ZAT10, STZ salt tolerance zinc finger (.1... Lus10014631
[exp]
2.4 0.9133
AT3G47670 Plant invertase/pectin methyle... Lus10008625
[exp]
2.8 0.9035
AT5G16880 Target of Myb protein 1 (.1.2.... Lus10005924
[exp]
3.5 0.9106
AT5G09310 unknown protein Lus10037415
[exp]
6.0 0.9065
AT3G02430 Protein of unknown function (D... Lus10012734
[exp]
7.1 0.9066
AT5G19910 MED31 SOH1 family protein (.1.2) Lus10016131
[exp]
9.9 0.9025
AT5G24430 Calcium-dependent protein kina... Lus10008875
[exp]
10.4 0.8923
AT5G53560 B5#2, ATB5-A, A... ARABIDOPSIS CYTOCHROME B5 ISOF... Lus10008838
[exp]
17.0 0.9120
AT1G68140 Protein of unknown function (D... Lus10004940
[exp]
19.3 0.8770

Lus10010348 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.