Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G78280 1206 / 0 transferases, transferring glycosyl groups (.1) AT5G06550 257 / 1e-75 unknown protein AT5G63080 92 / 4e-19 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT3G20810 48 / 3e-05 JMJ30, JMJD5 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.3) AT5G57360 45 / 0.0002 LKP1, FKL2, ADO1, ZTL ZEITLUPE, LOV KELCH PROTEIN 1, FKF1-LIKE PROTEIN 2, ADAGIO 1, Galactose oxidase/kelch repeat superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036482 [exp] 1856 / 0 AT1G78280 1194 / 0.0 transferases, transferring glycosyl groups (.1) Lus10029343 [exp] 263 / 2e-77 AT5G06550 730 / 0.0 unknown protein Lus10016202 [exp] 260 / 1e-73 AT5G06550 724 / 0.0 unknown protein Lus10008727 [exp] 66 / 2e-11 AT5G36950 286 / 5e-94 DegP protease 10 (.1) Lus10001249 [exp] 54 / 2e-07 AT5G63080 232 / 8e-74 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10037290 [exp] 42 / 0.0003 AT3G45880 164 / 7e-51 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G099400 [exp] 1330 / 0 AT1G78280 1234 / 0.0 transferases, transferring glycosyl groups (.1) Potri.016G065400 [exp] 252 / 7e-74 AT5G06550 711 / 0.0 unknown protein Potri.015G080400 [exp] 92 / 5e-19 AT5G63080 548 / 0.0 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.001G016200 [exp] 49 / 1e-05 AT3G20810 540 / 0.0 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF02373 [flax] [poplar] JmjC JmjC domain, hydroxylase CL0271 [flax] [poplar] F-box PF00646 [flax] [poplar] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Lus10010350 pacid=23169491 polypeptide=Lus10010350 locus=Lus10010350.g ID=Lus10010350.BGIv1.0 annot-version=v1.0 ATGGAGAATCCTCAAGTTGATCCAATGTTCGTCGTGAAAGATCGCAGATCCGACGCGCTCGGTGATCTTCGTGTTATCCCGGATGAGCTCGTTGCTTCCA TTTTGGAGCATCTCACTCCCAGAGATGTCGCTAATCTCGCTTGTGTCAGCAGTGTGATGTACATATTCTGTAATGAAGAGCCACTGTGGATGAGCTTATG CCTCAGCAGAGCTAGAGGCCAGATACAATACAAAGATTCCTGGAAGAAGACAACCTTGCATTTAGAGAATGTTGAGGGTAAAGGACACAGCGGCAGGCAA ATTGCTTTTGACGGATTCAGCTCTTTGTATTTGTATCGAAGAATGTATAGATGCAATACCACACTGGATAGCTTTACTTTTGATGGGGGGAATGTGGAGA GAAAGAAAGAGATTTCACTGGAAGAGTTTCAGCATCAGTATGACGGGAAAAAACCGGTTTTGCTGGCAGGGTTAGCTGATAATTGGCCGGCAAGGAGTTC ATGGACAATTGACCAGTTAATGATGAAATACGGTGATAAAGCTTTTAGGATTTCTCAGAGGAGCGCTCACAAATTATCGATGGAATTAAACGATTATTTG GCTTATGTGAATCTTCAACATGATGAGGATCCCTTGTATATTTTTGATGACAAGTTTGGTGAAACTGTTCCTAGCTTGTTGGAGGATTATAATGTGCCTC ATCTTTTTCAAGAAGACTACTTTGACGTCTTAGATAGAGAGCAGCGACCTCCATTTAGATGGCTTATTATAGGGCCAGAGAGGTCTGGTGCATCTTGGCA TGTTGATCCTGCACTTACAAGTGCCTGGAATACTCTTCTGTGTGGCCGTAAGAGGTGGGCTTTGTATCCTCCTGGAAGGGTGCCTCTAGGTGTTACTGTT CACGTGAATGAAGATGACGGGGACGTTAATATCGACACTCCATCATCACTGCAGTGGTGGCTGGACTATTATCCACTTCTTGCTGATGAAGACAAACCGA TTGAATGTACCCAATTACCTGGGGAGACGATCTTTGTTCCAAGTGGATGGTGGCACTGTGTACTAAATCTTGAAACAACAATTGCCGTTACACAAAATTT TGTGAACTCCAAAAATTTTCAGTACGTTTGCCTGGATTTGACACCGGGTTATCACCACAAAGGAGTATGCCGTGCTGGGTATCTGGCAATTGATGAGGTC AGTCTAGATTATGCTAAACTGAGTATTGAGAAAGATGACCAAAGTTATCCGGATTTGACGAGGAAAGAAAAGAGGCTCAAAATGCAAGATGGTACAGAAG AGTCAGAGTCTGAGATAACTACCAATGGTGCCTCTAAAACTCATGATCTATGGAGACAAGACTTCTCGTATGATATTGAATTCTTAGCCACTCTTTTGGA TAAAGAGAGAGACCACTACAATGCTCCATGGAGCTTAGGCAATTGCATTGGACAACGAGAAATGCGAGACTGGTTATATAAACTTTGGATTGGTAAACCA GGAGCACGGGACCTCATATGGAAGGGGGCATGTCTTGCGCTGAATGCAGAGAAATGGTTTCATTGTCTTGAAGCAGTATGTACTTTCCACAACTTTCCTT CTCCAACGACTGATGAGAGGCTTCCTGTGGGAACTGGTAGTAATCCTGTATATCTCCTCCCTGACTGTGTAGTTAAAGTATTTGTGGAAGGTGGACTTGA AACTTCATTGTACGGGTTAGGGACCGAGCTTCAGTTTTACAGTTTGCTGCACAAAGTAAGCTCACCTCTAAAACAATTTGTTCCGGAAATTCTGTCGAGT GGGATTATTTATCTCGAAGATGGAACTCATAAAATTGAGCCATGGGATGGTAAAGGGGTGCCAGTAATAATCACCAGCTCCAATCTGATTTCAGTTGGGC ATGAAGACGATGTTTTTCCTTTTGGAGTGTGGAGCAAAAACATGCTTGAATTGAGTAGGGCCAATATGCCAAAGAATGAGTTGATCAATCCATTTGGATC CACAAAGATATGGCCTTTCATAGTAACAAAGAGATGCAAAGGGAAGATATTTGCTGAACTGAGAGATGAACTTTCGTGGGAAGAGGCTCAAAACCTTGCT TCCTTCCTGGGAGAGCAGCTACGCAACCTTCACCTTCTACCTTGCCCTCCTATTAATAAAGTTACTCTTCCGGAAAATGATCAGATCACAGGATCGTCCT TAACAAATGGGAAAGTTGGTGATACAGATTATCCAGTAGAGACGGAGATCATAATCAAGACGCTATGCATGAAAAAGAAACACGTCAAGACCCAACTAAC AACTTGGGGAGATCCCATTCCGGCCGCATTAATCGACAAAGTAGATGACTATCTGCCACATGATTTGTCTGTTTTGTTTCCAACGCATCAGGACGCGATT GGACAGAATGAAGCATGTCAACCTTTCTCCTGGATACACGCAGACATCATGGATGACAATATCCATATGGAATCATCTATAGCTTCTTTGGATAGAGATT CTTCTGAACATACTTCACGGGAGAACTCAAGCTCTATAAATGATTGTGGAAAGCTGCAGAAATTCTGGTCTCCTGGGCACATTATCGATTTCAGTAATCT CAAAACTGGTGACCGCATCTTGGATATCATACCAATCTACTTGGATGTCTTTAGGGGAGATTCTGGCCTCCTGAAACGATTATTGGATTGCTACAAACTG TCTTTGCTGGTAAAAAGGCAAAGTACATCTGCGCAAGAGAAGTCTGGGCGACTTTCTTACCGTGCCATGTGCTACTGTATACTGCATGAAGAGAATATAC TGGGGGCCATTTTCAGCATGTGGAAGGAACTGAGGGCGGCTAACTCGTGGGAGGAAGTTGAGCTGGCTGTCTGGGGAGAACTTAATAACTATGAGCCTGC TTCTTCCTTCGTCTCCTCCGAGAGTGTTGTTTGA
AA sequence Show only first row Show all	>Lus10010350 pacid=23169491 polypeptide=Lus10010350 locus=Lus10010350.g ID=Lus10010350.BGIv1.0 annot-version=v1.0 MENPQVDPMFVVKDRRSDALGDLRVIPDELVASILEHLTPRDVANLACVSSVMYIFCNEEPLWMSLCLSRARGQIQYKDSWKKTTLHLENVEGKGHSGRQ IAFDGFSSLYLYRRMYRCNTTLDSFTFDGGNVERKKEISLEEFQHQYDGKKPVLLAGLADNWPARSSWTIDQLMMKYGDKAFRISQRSAHKLSMELNDYL AYVNLQHDEDPLYIFDDKFGETVPSLLEDYNVPHLFQEDYFDVLDREQRPPFRWLIIGPERSGASWHVDPALTSAWNTLLCGRKRWALYPPGRVPLGVTV HVNEDDGDVNIDTPSSLQWWLDYYPLLADEDKPIECTQLPGETIFVPSGWWHCVLNLETTIAVTQNFVNSKNFQYVCLDLTPGYHHKGVCRAGYLAIDEV SLDYAKLSIEKDDQSYPDLTRKEKRLKMQDGTEESESEITTNGASKTHDLWRQDFSYDIEFLATLLDKERDHYNAPWSLGNCIGQREMRDWLYKLWIGKP GARDLIWKGACLALNAEKWFHCLEAVCTFHNFPSPTTDERLPVGTGSNPVYLLPDCVVKVFVEGGLETSLYGLGTELQFYSLLHKVSSPLKQFVPEILSS GIIYLEDGTHKIEPWDGKGVPVIITSSNLISVGHEDDVFPFGVWSKNMLELSRANMPKNELINPFGSTKIWPFIVTKRCKGKIFAELRDELSWEEAQNLA SFLGEQLRNLHLLPCPPINKVTLPENDQITGSSLTNGKVGDTDYPVETEIIIKTLCMKKKHVKTQLTTWGDPIPAALIDKVDDYLPHDLSVLFPTHQDAI GQNEACQPFSWIHADIMDDNIHMESSIASLDRDSSEHTSRENSSSINDCGKLQKFWSPGHIIDFSNLKTGDRILDIIPIYLDVFRGDSGLLKRLLDCYKL SLLVKRQSTSAQEKSGRLSYRAMCYCILHEENILGAIFSMWKELRAANSWEEVELAVWGELNNYEPASSFVSSESVV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G78280			transferases, transferring gly...		Lus10010350 [exp]	0	1
AT1G78280			transferases, transferring gly...		Lus10036482 [exp]	1.0	0.8894
AT4G23650		CDPK6, CPK3	Calcium dependent protein kina...		Lus10017537 [exp]	1.4	0.8775
AT1G61065			Protein of unknown function (D...		Lus10011208 [exp]	4.8	0.8242
AT4G37640		ACA2	calcium ATPase 2 (.1)		Lus10019300 [exp]	4.9	0.8480
AT4G12020	WRKY	MEKK4, MAPKKK11...	MAPK/ERK KINASE KINASE 4, MITO...		Lus10012027 [exp]	6.2	0.8285
AT1G32250			Calcium-binding EF-hand family...		Lus10030986 [exp]	7.1	0.8695
AT3G20410		CPK9	calmodulin-domain protein kina...		Lus10040071 [exp]	7.5	0.8573
AT1G75860			unknown protein		Lus10034539 [exp]	12.2	0.8492
AT3G24530			AAA-type ATPase family protein...		Lus10023642 [exp]	14.7	0.8014
AT1G76390		PUB43	plant U-box 43, ARM repeat sup...		Lus10018246 [exp]	15.5	0.7821

Compare expression of checked genes

Lus10010350 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.