Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G08980 344 / 1e-118 FBW2 F-BOX WITH WD-40 2 (.1.2.3.4.5) AT4G05460 112 / 1e-28 RNI-like superfamily protein (.1) AT5G57900 93 / 1e-21 SKIP1 SKP1 interacting partner 1 (.1) AT4G05497 88 / 5e-20 RNI-like superfamily protein (.1) AT4G05470 77 / 7e-16 RNI-like superfamily protein (.1) AT4G30640 73 / 2e-14 RNI-like superfamily protein (.1) AT4G05490 72 / 3e-14 RNI-like superfamily protein (.1) AT4G05475 71 / 6e-14 RNI-like superfamily protein (.1) AT5G52480 56 / 5e-09 RNI-like superfamily protein (.1.2) AT3G48880 50 / 6e-07 RNI-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036483 [exp] 630 / 0 AT4G08980 347 / 6e-120 F-BOX WITH WD-40 2 (.1.2.3.4.5) Lus10023277 [exp] 100 / 4e-24 AT4G05460 247 / 3e-80 RNI-like superfamily protein (.1) Lus10038528 [exp] 99 / 2e-23 AT4G05460 249 / 5e-81 RNI-like superfamily protein (.1) Lus10019104 [exp] 77 / 6e-16 AT5G57900 352 / 4e-122 SKP1 interacting partner 1 (.1) Lus10034452 [exp] 72 / 4e-14 AT5G57900 355 / 3e-123 SKP1 interacting partner 1 (.1) Lus10026115 [exp] 57 / 6e-09 AT4G05460 166 / 3e-49 RNI-like superfamily protein (.1) Lus10008704 [exp] 54 / 4e-08 AT4G03630 162 / 4e-50 RNI-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G099100 [exp] 406 / 7e-143 AT4G08980 352 / 1e-121 F-BOX WITH WD-40 2 (.1.2.3.4.5) Potri.016G019500 [exp] 82 / 1e-17 AT3G48880 76 / 7e-16 RNI-like superfamily protein (.1.2) Potri.018G104900 [exp] 80 / 9e-17 AT5G57900 377 / 8e-132 SKP1 interacting partner 1 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10010351 pacid=23169560 polypeptide=Lus10010351 locus=Lus10010351.g ID=Lus10010351.BGIv1.0 annot-version=v1.0 ATGGAAGGTGAAATGGATTCTAATTACAGGCCGTGGGACGAGTTGATTCCGGATGCACTAGGTCTGATCTTCAGCAAGCTTTGTTTGCAAGACATATTGA CAGTGGTTCCCAGGGTGTGCAAATCGTGGAACAGGGGGGTATCGGGGCCGTATTGTTGGCAGGAGATCGACATTGAAGAATGGAGTGAGCAATGTCAACC CGACCAGCTTGATCGCATGCTTGAAATGTTAATTACTCGGAGCTCGGGGTCACTTCGCAAACTCTCCGTCACTTGCTTCCGTAACGATACCATGTTCCCT TTCCTCGTCGACCATGCCCGGTCCCTTCAGACACTGAAGCTGCCAAGAAGCAGTTTGAATGACACCATAGTTGAACAGATTGCTGGAAGGCTATCAATGA TAACCTTCTTGGACTTAAGCTACTGCAGCAGAGTCGGCGCAGCCTCTCTAGAAGTACTCGGCAATAAGTGCAAATCCCTCGTGGGACTCTGTCGAAACAT GCACCCACTTGATGAAGCAGACAAGGAAGCACAAGAGAACGAGGCTCGAGCCATCGCCACCACGATGCCCAAACTTAAGCACCTCGAGATGGCCTACCAC CTCATAGGCACCGAGAACGCGATGAAGATCCTGTCGAGCTGCACCGATCTCGAGTACATGGACGTGAGAGGGTGTTGGGATGTGGAACTCGACGACAAGG TTATCCAAGAGAAGTTTCCGAAGTTGAAAGTTTTGGGACCTTTCGTGATGGACTACTACTACGAGATGGACAACTTGGACGACGAGTGCTACGAGTACTC GGATGCTTCCTCGTGGGAGTTTGATGCCGGTTCGATGGGGAGCTTTGAAGGGTATGAGTATGCGAGCTCGGATGAGATGTGGGATGACGAGAGGAGGCTC GAGGAGCTCGAGCTGAGGTTCTATGAAGGGATTGAGGATGCTGGACTTTATGGTTGGCCCCCATAA
AA sequence Show only first row Show all	>Lus10010351 pacid=23169560 polypeptide=Lus10010351 locus=Lus10010351.g ID=Lus10010351.BGIv1.0 annot-version=v1.0 MEGEMDSNYRPWDELIPDALGLIFSKLCLQDILTVVPRVCKSWNRGVSGPYCWQEIDIEEWSEQCQPDQLDRMLEMLITRSSGSLRKLSVTCFRNDTMFP FLVDHARSLQTLKLPRSSLNDTIVEQIAGRLSMITFLDLSYCSRVGAASLEVLGNKCKSLVGLCRNMHPLDEADKEAQENEARAIATTMPKLKHLEMAYH LIGTENAMKILSSCTDLEYMDVRGCWDVELDDKVIQEKFPKLKVLGPFVMDYYYEMDNLDDECYEYSDASSWEFDAGSMGSFEGYEYASSDEMWDDERRL EELELRFYEGIEDAGLYGWPP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G08980		FBW2	F-BOX WITH WD-40 2 (.1.2.3.4.5...		Lus10010351 [exp]	0	1
AT4G08980		FBW2	F-BOX WITH WD-40 2 (.1.2.3.4.5...		Lus10036483 [exp]	1.7	0.8091
AT1G76200			unknown protein		Lus10034571 [exp]	2.8	0.8294
AT4G33355			Bifunctional inhibitor/lipid-t...		Lus10023087 [exp]	7.3	0.8020
AT3G57450			unknown protein		Lus10018070 [exp]	8.9	0.8066
AT4G10265			Wound-responsive family protei...		Lus10039753 [exp]	9.5	0.8174
AT1G51660		ATMKK4, ATMEK4	ARABIDOPSIS THALIANA MITOGEN-A...		Lus10035764 [exp]	10.6	0.8006
AT1G25550	GARP		myb-like transcription factor ...		Lus10034280 [exp]	11.6	0.7445
AT1G67100	AS2	LBD40	LOB domain-containing protein ...		Lus10028469 [exp]	12.1	0.8010
AT3G02510			Regulator of chromosome conden...		Lus10017581 [exp]	14.5	0.7890
AT4G34700		CIB22, AtCIB22	B22 subunit of eukaryotic mito...		Lus10018052 [exp]	16.1	0.8074

Compare expression of checked genes

Lus10010351 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.