Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G78240 853 / 0 OSU1, TSD2, QUA2 TUMOROUS SHOOT DEVELOPMENT 2, QUASIMODO2, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT1G13860 585 / 0 QUL1 QUASIMODO2 LIKE 1 (.1.2.3.4) AT2G03480 553 / 0 QUL2 QUASIMODO2 LIKE 2 (.1.2) AT3G23300 327 / 1e-103 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G04430 323 / 5e-102 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT4G14360 319 / 1e-100 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT5G06050 297 / 1e-91 Putative methyltransferase family protein (.1) AT5G14430 296 / 1e-91 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT1G77260 280 / 3e-85 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT2G39750 279 / 2e-84 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036485 [exp] 1250 / 0 AT1G78240 928 / 0.0 TUMOROUS SHOOT DEVELOPMENT 2, QUASIMODO2, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10036883 [exp] 584 / 0 AT1G13860 887 / 0.0 QUASIMODO2 LIKE 1 (.1.2.3.4) Lus10037101 [exp] 579 / 0 AT1G13860 892 / 0.0 QUASIMODO2 LIKE 1 (.1.2.3.4) Lus10003656 [exp] 316 / 1e-99 AT5G14430 872 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10011815 [exp] 316 / 4e-99 AT1G04430 1045 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10022291 [exp] 313 / 3e-98 AT5G14430 881 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10038973 [exp] 290 / 2e-89 AT5G04060 907 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10030155 [exp] 290 / 6e-89 AT2G39750 1049 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10001013 [exp] 290 / 8e-89 AT2G39750 1053 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G098000 [exp] 926 / 0 AT1G78240 1040 / 0.0 TUMOROUS SHOOT DEVELOPMENT 2, QUASIMODO2, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.005G163900 [exp] 922 / 0 AT1G78240 1028 / 0.0 TUMOROUS SHOOT DEVELOPMENT 2, QUASIMODO2, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.008G094800 [exp] 620 / 0 AT2G03480 873 / 0.0 QUASIMODO2 LIKE 2 (.1.2) Potri.010G159400 [exp] 616 / 0 AT2G03480 885 / 0.0 QUASIMODO2 LIKE 2 (.1.2) Potri.002G036800 [exp] 322 / 1e-101 AT1G04430 989 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.005G226000 [exp] 313 / 5e-98 AT1G04430 939 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.001G342300 [exp] 301 / 1e-93 AT5G14430 893 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.008G059500 [exp] 291 / 4e-89 AT2G39750 1040 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.006G043600 [exp] 280 / 1e-85 AT3G10200 928 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.010G199300 [exp] 278 / 2e-84 AT2G39750 998 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF03141 [flax] [poplar] Methyltransf_29 Putative S-adenosyl-L-methionine-dependent methyltransferase
Representative CDS sequence Show only first row Show all	>Lus10010353 pacid=23169539 polypeptide=Lus10010353 locus=Lus10010353.g ID=Lus10010353.BGIv1.0 annot-version=v1.0 ATGTCGAGGCCTCTCCATCGAGGCATATCTGGGATGCGTAGCAGCGAGGATCTACTATGGGATTCGCAAATGAAAGCTAAAACCCTTAAGGATAAGGAGG ATCTCGCTTCTATAGATAATAATAATAGCTACCTTACACTGAGGTTTCCTTTTCGAGCATTTTTCCAAGACTACAATAACAGTAGCTCGCCTCCTTCCAA ATGTGGATCGGCATTATTTCTTATTAGATTCAGCTTAGCTGTCATTGTGATTCTAGCTCTTTCCGGATCTTTCTGGTGGACGATCTCCGTTTCCACAAAC ACCAGAGGGCAGATAGTCCATGGTTACAGGCGGCTTCAGGAGCAGCTTTTCTCGGATTTGTGGGATATTGGGGAGCTTGCTTCGTCTTCATCATCGAAGT CGAAAGAGGTTGATTTCTGCCCTCTCGATGAATCTGAGAGCTACGTCAATTGCTTCAATGACTCTGTTCGTCAATGTGGGATCGGTTCGTCGGAGAGGAG TTGCTTGCTTCTTCCGCCGGTTAATTATAGGATTCCTCTTCGGTGGCCGACTGGACGGGACGTTATTTGGGTTTCGAATGTTAAGATCACTGCCGATGAG GTGCTTTCGTCTGGTAGCTTCACTAAGAGGATGATGATGCTGGAAGAAGATCAGATCTCGTTTCGTTCAGCATCTCATATGTTTAATAGTGTTGAAGATT ACACGCATCAAATTGCTGAAATGATTGGGTTGAGGAATGAGTCTAACTTCATACAGGCTGGGGTTCGAACGATTCTTGATATAGGCTGTGGTTATGGTAG TTTCGGAGCACATCTCTTCTCAAGCCAGCTTTTGACAATGTGCATTGCGAATTACGAGTCGTCTGGCAGTCAGATTCAACTAACTCTTGAAAGAGGCCTT CCGGCGATGATTGGTTCTTTCTCTTCGAAGCAGTTACCTTATCCTTCTCTTTCCTTTGACATGTTGCATTGCGCAAGATGTGGCGTAGATTGGGACCAAA AAGATGGTATTTACTTGATTGAGGCTGATCGAGTGTTAAGGCCAGGGGGCTATTTTGTTTGGACTTCTCCACTTACCAATGCTCATAACAAGGAGACTCT ACAAAGGTGGAGCTTCATTCGAAATTTTGCCGAAAACATTTGCTGGGTGTTGCTGTCACAAGAAGAAGAAACTGTTGTATGGAGAAAGACCACCAAAAAG AACTGTTACAGTTCCAGGAAGCAGGGTTCAGGACCTTCTCTTTGCAGCAAACGCTACGATATCGAGTCTCCCTATTATCAACCCCTTCAAGCATGCATAG GGGGAACTCGGAGTTCCCGATGGATTCCTATTGAAGAAAGGCCAACTTGGCCTTCTAGATCACATTTGAGCCAGAATGAGCTTGCATTACTTGGAACGAA CTCGGAAGACTTTGCCGAGGATGCTGAGAAATGGAAGAAAGCAGTTACCAATTATTGGTCGCTTCTCTCTCCTTTGATATTCTCTGATCATCCGAAGAGG CCCGGCGAGGAAGATCCTTCGCCGCCTTATAACATGCTCAGGAATGTTCTCGATATGAACGCACATTTCGGAGGACTCAATTCTGCATTGCTCGAGACCG GGAAGTCGGTCTGGGTTATGAATGCGGTTGCGACAACAGCACCCAACTATCTCCCTCTTATACATGATCGCGGATTCGTCGGTGTATTGCATGATTGGTG CGAGGCATTTCCATCTTATCCCAGAAGCTACGATTTAGGTTGGTTGATCCTCCGCGACACAGCAGCACTGATCGAATCGTCGAGAGCTCAAACGGCGCAG CTGAAGTGGGAAGCTCGGGTCGTAGACATCGATAGCAACAGCGAGGAGAAACTCCTCATCTGTCAAAAGCCTTTCGTCAAGAGACAACCAAGCCAAACAT CCTGA
AA sequence Show only first row Show all	>Lus10010353 pacid=23169539 polypeptide=Lus10010353 locus=Lus10010353.g ID=Lus10010353.BGIv1.0 annot-version=v1.0 MSRPLHRGISGMRSSEDLLWDSQMKAKTLKDKEDLASIDNNNSYLTLRFPFRAFFQDYNNSSSPPSKCGSALFLIRFSLAVIVILALSGSFWWTISVSTN TRGQIVHGYRRLQEQLFSDLWDIGELASSSSSKSKEVDFCPLDESESYVNCFNDSVRQCGIGSSERSCLLLPPVNYRIPLRWPTGRDVIWVSNVKITADE VLSSGSFTKRMMMLEEDQISFRSASHMFNSVEDYTHQIAEMIGLRNESNFIQAGVRTILDIGCGYGSFGAHLFSSQLLTMCIANYESSGSQIQLTLERGL PAMIGSFSSKQLPYPSLSFDMLHCARCGVDWDQKDGIYLIEADRVLRPGGYFVWTSPLTNAHNKETLQRWSFIRNFAENICWVLLSQEEETVVWRKTTKK NCYSSRKQGSGPSLCSKRYDIESPYYQPLQACIGGTRSSRWIPIEERPTWPSRSHLSQNELALLGTNSEDFAEDAEKWKKAVTNYWSLLSPLIFSDHPKR PGEEDPSPPYNMLRNVLDMNAHFGGLNSALLETGKSVWVMNAVATTAPNYLPLIHDRGFVGVLHDWCEAFPSYPRSYDLGWLILRDTAALIESSRAQTAQ LKWEARVVDIDSNSEEKLLICQKPFVKRQPSQTS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G78240		OSU1, TSD2, QUA...	TUMOROUS SHOOT DEVELOPMENT 2, ...		Lus10010353 [exp]	0	1
AT1G78240		OSU1, TSD2, QUA...	TUMOROUS SHOOT DEVELOPMENT 2, ...		Lus10036485 [exp]	1.0	0.9419
AT2G47470		ATPDI11, ATPDIL...	UNFERTILIZED EMBRYO SAC 5, MAT...		Lus10010274 [exp]	7.7	0.8888
AT5G50850		MAB1	MACCI-BOU, Transketolase famil...		Lus10043191 [exp]	13.9	0.8500
AT2G47470		ATPDI11, ATPDIL...	UNFERTILIZED EMBRYO SAC 5, MAT...		Lus10036337 [exp]	16.2	0.8674
AT3G49720			unknown protein		Lus10019279 [exp]	17.5	0.8574
AT4G33410		ATSPPL1	SIGNAL PEPTIDE PEPTIDASE-LIKE ...		Lus10039239 [exp]	17.7	0.8703
AT1G63000		UER1, NRS/ER	"UDP-4-KETO-6-DEOXY-D-GLUCOSE-...		Lus10014147 [exp]	20.0	0.8836
AT1G16780		AtVHP2;2, AVPL1	Inorganic H pyrophosphatase fa...		Lus10034800 [exp]	23.0	0.8566
AT3G11320			Nucleotide-sugar transporter f...		Lus10028255 [exp]	28.0	0.8474
AT1G77610			EamA-like transporter family p...		Lus10042700 [exp]	28.5	0.8067

Compare expression of checked genes

Lus10010353 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.