Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G34780 268 / 2e-89 ATAPRL4 APR-like 4 (.1.2) AT4G08930 224 / 3e-72 ATAPRL6 APR-like 6 (.1) AT3G03860 129 / 1e-35 ATAPRL5 APR-like 5 (.1) AT5G18120 117 / 6e-31 ATAPRL7 APR-like 7 (.1) AT3G54960 54 / 3e-08 ATPDI1, ATPDIL1-3 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 1, PDI-like 1-3 (.1.2) AT2G47470 52 / 1e-07 ATPDI11, ATPDIL2-1, UNE5, MEE30 UNFERTILIZED EMBRYO SAC 5, MATERNAL EFFECT EMBRYO ARREST 30, PDI-LIKE 2-1, ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 11, thioredoxin family protein (.1.2.3.4) AT2G32920 51 / 4e-07 ATPDI9, ATPDIL2-3 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 9, PDI-like 2-3 (.1) AT1G04980 48 / 5e-06 ATPDI10, ATPDIL2-2 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 10, PDI-like 2-2 (.1) AT5G60640 44 / 7e-05 ATPDI2, ATPDIL1-4 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 2, PDI-like 1-4 (.1.2.3) AT1G21750 42 / 0.0003 ATPDI5, ATPDIL1-1 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 5, PDI-like 1-1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036486 [exp] 540 / 0 AT1G34780 272 / 2e-90 APR-like 4 (.1.2) Lus10033449 [exp] 370 / 2e-129 AT1G34780 260 / 8e-86 APR-like 4 (.1.2) Lus10020928 [exp] 370 / 3e-129 AT1G34780 259 / 2e-85 APR-like 4 (.1.2) Lus10005703 [exp] 133 / 7e-37 AT3G03860 310 / 7e-106 APR-like 5 (.1) Lus10020283 [exp] 123 / 3e-33 AT3G03860 296 / 3e-100 APR-like 5 (.1) Lus10015160 [exp] 52 / 2e-07 AT1G04980 621 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 10, PDI-like 2-2 (.1) Lus10020691 [exp] 52 / 3e-07 AT2G47470 473 / 3e-168 UNFERTILIZED EMBRYO SAC 5, MATERNAL EFFECT EMBRYO ARREST 30, PDI-LIKE 2-1, ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 11, thioredoxin family protein (.1.2.3.4) Lus10010274 [exp] 50 / 6e-07 AT2G47470 549 / 0.0 UNFERTILIZED EMBRYO SAC 5, MATERNAL EFFECT EMBRYO ARREST 30, PDI-LIKE 2-1, ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 11, thioredoxin family protein (.1.2.3.4) Lus10036337 [exp] 50 / 6e-07 AT2G47470 548 / 0.0 UNFERTILIZED EMBRYO SAC 5, MATERNAL EFFECT EMBRYO ARREST 30, PDI-LIKE 2-1, ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 11, thioredoxin family protein (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G097601 [exp] 334 / 4e-115 AT1G34780 357 / 9e-124 APR-like 4 (.1.2) Potri.005G164200 [exp] 331 / 7e-114 AT1G34780 364 / 1e-126 APR-like 4 (.1.2) Potri.013G057100 [exp] 122 / 7e-33 AT5G18120 293 / 3e-99 APR-like 7 (.1) Potri.019G035700 [exp] 117 / 6e-31 AT5G18120 277 / 4e-93 APR-like 7 (.1) Potri.002G198300 [exp] 55 / 2e-08 AT2G47470 530 / 0.0 UNFERTILIZED EMBRYO SAC 5, MATERNAL EFFECT EMBRYO ARREST 30, PDI-LIKE 2-1, ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 11, thioredoxin family protein (.1.2.3.4) Potri.014G122800 [exp] 54 / 4e-08 AT2G47470 551 / 0.0 UNFERTILIZED EMBRYO SAC 5, MATERNAL EFFECT EMBRYO ARREST 30, PDI-LIKE 2-1, ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 11, thioredoxin family protein (.1.2.3.4) Potri.008G040100 [exp] 53 / 1e-07 AT3G54960 288 / 7e-92 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 1, PDI-like 1-3 (.1.2) Potri.014G160000 [exp] 47 / 8e-06 AT1G04980 617 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 10, PDI-like 2-2 (.1) Potri.002G082100 [exp] 46 / 1e-05 AT1G21750 689 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 5, PDI-like 1-1 (.1.2) Potri.019G082400 [exp] 44 / 9e-05 AT1G35620 549 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 8, PDI-like 5-2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [flax] [poplar] Thioredoxin PF00085 [flax] [poplar] Thioredoxin Thioredoxin
Representative CDS sequence Show only first row Show all	>Lus10010354 pacid=23169537 polypeptide=Lus10010354 locus=Lus10010354.g ID=Lus10010354.BGIv1.0 annot-version=v1.0 ATGACAGAGTCGATCTTTCGGTTTCGAGATGGCAATTCTGATTTCATTGATGCTAACTCTCTGGTTTCCGCTTGCGTCAACGAGGGAGACGAAGCTTCGT TACAGAAAGCAATGGATTTGGTTCTCAAGGGAAGGTTGGAGTACGTTGCTGTGTTCTTTTATGCAGCATGGTGTCCTTTCTCCAAGGCATTCAAACCTAA GTTTCCTCTCTTGGCTTCTTTGTATCCATCTATAGCCCACATTGCAGTAGAAGAATCAGCAATCCGACCCAGCATACTCTCGAAGTATGGAGTTCATGGT TTTCCTACTCTCCTGCTTCTTAATTCTACAATGCGTGTGCGCTATCATGGCTCCCGAACTCTTACTTCTCTGGTTGCCTTCTACAATGATGTAGCTGGTC TTACTATTACATTACCAGACAAATCTTCCTTGTCCAAAGTCTGGCAGCACCCTCAAAACCTCAGAAAGCCCGATGATTCCAGCTGCCCATTCTCATGGCC TAGGTCTCCGGAGAAACTGCTAACTCCCGAGACGTATTTGGCTCTGGCCTCGGCTTTCGTACTCATCAGACTGATGTACTTGATCTTCCCGACTCTGGTC CGATTTGCTTGGCTTGTTTGGAGAAGGCAAGCCCGGATACGAAGCATATTGGATCACCCGAGGACCTTTATGAAAGATGTCGTCCAGGCGTTCAGGTGTC TCGTGGATCCTTGCAAGAGAAGCAACCTCCAGGAAGGGGCGATGAATGCCAGAGCTTGGGCTTCGAAATCGCTTGCGACGACTGTGTCGATCGGAGAAGG GAGCACGAGTCGAGCTGCTGCTCAAATACGCGAATGCTGCTGA
AA sequence Show only first row Show all	>Lus10010354 pacid=23169537 polypeptide=Lus10010354 locus=Lus10010354.g ID=Lus10010354.BGIv1.0 annot-version=v1.0 MTESIFRFRDGNSDFIDANSLVSACVNEGDEASLQKAMDLVLKGRLEYVAVFFYAAWCPFSKAFKPKFPLLASLYPSIAHIAVEESAIRPSILSKYGVHG FPTLLLLNSTMRVRYHGSRTLTSLVAFYNDVAGLTITLPDKSSLSKVWQHPQNLRKPDDSSCPFSWPRSPEKLLTPETYLALASAFVLIRLMYLIFPTLV RFAWLVWRRQARIRSILDHPRTFMKDVVQAFRCLVDPCKRSNLQEGAMNARAWASKSLATTVSIGEGSTSRAAAQIRECC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G34780		ATAPRL4	APR-like 4 (.1.2)		Lus10010354 [exp]	0	1
AT3G47670			Plant invertase/pectin methyle...		Lus10008625 [exp]	4.2	0.8701
AT2G02870			Galactose oxidase/kelch repeat...		Lus10012841 [exp]	12.1	0.8610
AT3G29170			Eukaryotic protein of unknown ...		Lus10007465 [exp]	13.0	0.8600
AT3G11400		ATEIF3G1, EIF3G...	eukaryotic translation initiat...		Lus10028823 [exp]	14.1	0.8619
AT1G71840			transducin family protein / WD...		Lus10031629 [exp]	14.7	0.8680
AT1G11360			Adenine nucleotide alpha hydro...		Lus10033749 [exp]	24.0	0.8492
AT5G46250			RNA-binding protein (.1.2.3)		Lus10023315 [exp]	26.2	0.8618
AT2G42910			Phosphoribosyltransferase fami...		Lus10031395 [exp]	28.4	0.7901
AT5G06280			unknown protein		Lus10016973 [exp]	33.0	0.8321
AT3G02430			Protein of unknown function (D...		Lus10012734 [exp]	35.1	0.8587

Compare expression of checked genes

Lus10010354 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.