Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G35220 1445 / 0 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036487 [exp] 1428 / 0 AT1G35220 1100 / 0.0 unknown protein Lus10036488 [exp] 382 / 1e-126 AT1G35220 293 / 2e-93 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G100800 [exp] 1578 / 0 AT1G35220 1452 / 0.0 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10010355 pacid=23169524 polypeptide=Lus10010355 locus=Lus10010355.g ID=Lus10010355.BGIv1.0 annot-version=v1.0 ATGCGCACCTCTGAAGCAGACTTCAGTGATTACGAAGCGGTCAATATGCAGCATGTTCCAGCGACAATTGAGGAGCAGTTGATTCTGAAAGCAATAAAAG AGGAAAGTCCATGGGAAAATCTTCCAAAAAGGCTTCAGGCTACTTTTAGTTCTAAAGAGGAATGGCATAGAAGGATAGTTGAGCACTGCATCAGGAAACG GCTGCAATGGAATGCGTCGTTTGCACGAAAAGTATGCAAAGAAGGTGAATATTATGAAGAGATGATGCGTTACTTGCGAAAGAATCTGGCGCTGTTTCCC TATCACCTTGCGGATTATGTTTGTCGTGTGATGAGGATATCACCCTTCCGATATTACTGTGATATGATCTTTGAGGTTATGAAAAATGAACAACCATATG ACAGCATCCCCAACTTCAGTGCTGCAGATGCATTGCGGCTTACAGGAATTGGTAGAAATGAGTTCATCGATATTATGAACAAATGCAGATCTAAGAAAAT TATGTGGAAGCTGAACAAGTCAATTGCAAAAGAACTCTTACCTGCACATCCTGCAGACTTTGCAATAGAACCATGGTGGGGTGTCTGTCTTGTCAACTTT ACACTGGAAGAGTTTAAGAAACTCTCTGAAGATGAGACTGCGACCATAGACAAGATCTGCAAGGAGGAAGCAAATGCGTACATCCTCTTTGATCCTGAGA TCGTAAAGGGCATGTATCAAAGAGGACTGATCTACTTTGATGTCCCCGTTTATGCAGATGACCGTTTTAAAGTTTCCAGGCTGGAAGGCTTTGTTTCGAA CAGAGAGCAGTCTTATGAGGATCCTATTGAGGAGTTACTGTATGCAGTCTTTGTTGTTTCAAGTGAGAATGCTACGGTAGCAGAACTGGCAGCCACCTTA CAGGCTGATCTTTCTAAGTTACAAGCAGCTGCGTCTTTTGCTTGTCGATTGGGATGGGCACAGAAACTAATCGATCCGGGGTCTGTTCTTCAAGATGCTA ACATGCCTGTCTCTCCAAGAGCCAGTGTCACGGATGAAGATGATACTGCTCGTGCTAGTATAAGCTCCACAAGGTCAACTGATGGTGATGGTCAACAAGA ACCTCAAACTTCAGAATACCTTGGTCCCCGTGGGAGCTACACTCGTGTTGCATTTATCGTTGATGCTAATATAACATCCTATCTTATGATGGGGTCAGTT TCCCCTGGCTTGAAATCTCATGCTGTGACATTATACGAAGCTGGCAAGCTGGGTCATGCTAGCATTGCAGAACTTTGTAAAGATCTCAGTTCATTAGAGG GAGCAAAATTTGAGGGTGAATTACAGGAATTCGCAAATCATGCCTTTAGCCTCCGTTGCGTCCTAGAATGTCTTCTCTCAGGTGGAGTCGCTACTGATGC AGAAGCAGATGAAGTTTGCAATAAGTTGGGTACAGGTGTTCCTAACAGTGACGAGTCTACTTTAGTTGCAGAGGTCACTTCTACTGAAAAATCTGGAACT TCCGGTGTTTCCGAAGCTGAAGCAGAAGCGAATGATTCGACCAAGTCAGAAGTTCCTCTAGATGGCAATGAGTCTGAAGAGGGGACAAAGTCTTATCAGA ATGCTGGAAATGATGACAAGGCTATTCCAGTGGAAGGTTCCGATATTGGGAAATGTATAAGAAGGAAAAGAAGGTACCGTGTCGATATTCTGCGCTGTGA AAGTTTGGGCGCCCTAGCACCAGCAACATTAGACAGGCTATTCCGCCGTGACTATGATATTGTCGTATCCATAGTTCCCCTTCCACATTCCGCAGTTCTT CCCGGACCAAAAGGTCCCCTCCATTTCGGCCCTCCCACTCATTCGTCACTGACACCATGGATGAAGTTGGTGCTATATTCAACTGTAGGCTGTGGACCCC TTTCGATCGTTCTCATGAAAGGACAGTGTTTACGTTTGCTTCCTGCACCACTAGCTGGTTGTGAGAAAGCCTTAATATGGTCTTGGGATGATTCAACAGT TGGTGGATTGGGTGGTAAGTTTGAAGGAAATTTGGTGAAGGGAAGTGTCCTGTTGCATTGCTTGAACTCCTTACTCAAGTACTCAGCTATCCTCGTGCAG CCCCTCAGTAAATCTGATCTTGATCAATCCGAAAGAGTTATTACAATGGACGTACCCTTGCCTCTTAAAAACGCCGATGGTTCAATCGCCTGTGTAGGAA TCGAATCAGGTCTGTGTGAACAAGAACGGTCGAAACTAAACTCCTTGCTAATTAGTGTGACAAACAAGCTGGAATTGCCCACAATCGGTTATATCCGCCT CTTGAAGCTTTTCAATGAAAGAGAGATGGACCGATTTGCCCCCGACGACCAGAAATATGAATGGCTTCCTCTAAGTGTTGAGTTCGGGATGCCTCTTTTC AGTCCGAAGCTATGTAACAACATTTGTAAAAGGGTGGTTGCGTCCGAGCTACTGCAATCCGATTCGCTTACTGAACATCACGACACGATGCAAGGCTTAC GGAAAAGGTTGCGAGATATATGCTCCGAATACCACGCAACAGGTCCGGTTTCCAAGCTCCTTTATCAGAAAGAGCTATCGAAAGATTCGTCTAAACAACT CCTGATGAACTACGCTAGTGGGAGGTGGAATCCCCTTGTGGACCCTTCTTCTCCCATCTCTGGAGCTTCGAGTGATCTTCAGAGATTGAAGCTAGCTAAT CGTCAGCGCTGCAAGACTGAAGTGCTGAGTTTTGATGGGAGCATTTTACGATCATATGCTCTGACTCCGGTGTACGAGGCTTCTGCGAAGGCGATTGAAG AAGCCTCGCTCGTCAACACTATAAAAGTCGATCCAAACGAAGCAGATAGTAGGGAAGTACAACTGCCAGGTGTCAACCTTCTTTTCGATGGTTGTGAATT GCACCCTTTTGAGATAGGTGCTTGCCTGCAGGCCCGCCAACCTGTTGCCTTAATAGCAGAGGCTGCATTAGCCTCGGCTTCTGGAATCAAGTAG
AA sequence Show only first row Show all	>Lus10010355 pacid=23169524 polypeptide=Lus10010355 locus=Lus10010355.g ID=Lus10010355.BGIv1.0 annot-version=v1.0 MRTSEADFSDYEAVNMQHVPATIEEQLILKAIKEESPWENLPKRLQATFSSKEEWHRRIVEHCIRKRLQWNASFARKVCKEGEYYEEMMRYLRKNLALFP YHLADYVCRVMRISPFRYYCDMIFEVMKNEQPYDSIPNFSAADALRLTGIGRNEFIDIMNKCRSKKIMWKLNKSIAKELLPAHPADFAIEPWWGVCLVNF TLEEFKKLSEDETATIDKICKEEANAYILFDPEIVKGMYQRGLIYFDVPVYADDRFKVSRLEGFVSNREQSYEDPIEELLYAVFVVSSENATVAELAATL QADLSKLQAAASFACRLGWAQKLIDPGSVLQDANMPVSPRASVTDEDDTARASISSTRSTDGDGQQEPQTSEYLGPRGSYTRVAFIVDANITSYLMMGSV SPGLKSHAVTLYEAGKLGHASIAELCKDLSSLEGAKFEGELQEFANHAFSLRCVLECLLSGGVATDAEADEVCNKLGTGVPNSDESTLVAEVTSTEKSGT SGVSEAEAEANDSTKSEVPLDGNESEEGTKSYQNAGNDDKAIPVEGSDIGKCIRRKRRYRVDILRCESLGALAPATLDRLFRRDYDIVVSIVPLPHSAVL PGPKGPLHFGPPTHSSLTPWMKLVLYSTVGCGPLSIVLMKGQCLRLLPAPLAGCEKALIWSWDDSTVGGLGGKFEGNLVKGSVLLHCLNSLLKYSAILVQ PLSKSDLDQSERVITMDVPLPLKNADGSIACVGIESGLCEQERSKLNSLLISVTNKLELPTIGYIRLLKLFNEREMDRFAPDDQKYEWLPLSVEFGMPLF SPKLCNNICKRVVASELLQSDSLTEHHDTMQGLRKRLRDICSEYHATGPVSKLLYQKELSKDSSKQLLMNYASGRWNPLVDPSSPISGASSDLQRLKLAN RQRCKTEVLSFDGSILRSYALTPVYEASAKAIEEASLVNTIKVDPNEADSREVQLPGVNLLFDGCELHPFEIGACLQARQPVALIAEAALASASGIK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G35220			unknown protein		Lus10010355 [exp]	0	1
AT1G35220			unknown protein		Lus10036487 [exp]	1.4	0.9772
AT3G50590			Transducin/WD40 repeat-like su...		Lus10002967 [exp]	1.4	0.9722
AT2G25800			Protein of unknown function (D...		Lus10008430 [exp]	2.8	0.9590
AT4G32640			Sec23/Sec24 protein transport ...		Lus10000939 [exp]	4.2	0.9553
AT5G24710			Transducin/WD40 repeat-like su...		Lus10040563 [exp]	4.6	0.9593
AT1G13860		QUL1	QUASIMODO2 LIKE 1 (.1.2.3.4)		Lus10037101 [exp]	5.0	0.9243
AT2G21390			Coatomer, alpha subunit (.1)		Lus10037538 [exp]	5.9	0.9590
AT3G59770		AtSAC9, SAC9	ARABIDOPSIS THALIANA SUPPRESSO...		Lus10043474 [exp]	6.5	0.9529
AT3G08530			Clathrin, heavy chain (.1)		Lus10007499 [exp]	6.9	0.9494
AT1G31730			Adaptin family protein (.1)		Lus10037272 [exp]	8.4	0.9390

Compare expression of checked genes

Lus10010355 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.