Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G11770 65 / 1e-12 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT5G06450 57 / 2e-09 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT4G13870 44 / 7e-05 WRNEXO, ATWRNEXO, WEX, ATWEX Werner syndrome-like exonuclease (.1.2) AT2G36110 42 / 0.0002 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036491 [exp] 464 / 7e-168 AT3G11770 64 / 4e-12 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10013769 [exp] 64 / 8e-12 AT4G13870 105 / 4e-27 Werner syndrome-like exonuclease (.1.2) Lus10039164 [exp] 63 / 1e-11 AT4G13870 105 / 2e-27 Werner syndrome-like exonuclease (.1.2) Lus10029478 [exp] 62 / 1e-11 AT5G48350 82 / 2e-19 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10039591 [exp] 56 / 3e-09 AT3G12410 86 / 1e-20 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10022556 [exp] 51 / 2e-07 AT4G13870 246 / 1e-80 Werner syndrome-like exonuclease (.1.2) Lus10043049 [exp] 48 / 2e-06 AT2G36110 121 / 4e-34 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10029479 [exp] 47 / 2e-06 AT2G36110 87 / 4e-21 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G021900 [exp] 272 / 1e-92 AT3G11770 77 / 3e-17 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.013G049000 [exp] 95 / 1e-23 AT5G06450 / Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.006G031400 [exp] 63 / 8e-12 AT3G12410 101 / 2e-26 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.016G028700 [exp] 57 / 1e-09 AT4G13870 104 / 5e-27 Werner syndrome-like exonuclease (.1.2) Potri.017G059200 [exp] 56 / 5e-09 AT4G13870 288 / 4e-97 Werner syndrome-like exonuclease (.1.2) Potri.016G028501 [exp] 52 / 8e-08 ND / Potri.011G116000 [exp] 51 / 2e-07 AT3G12410 91 / 2e-22 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.016G028400 [exp] 44 / 4e-05 ND /
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0219 [flax] [poplar] RNase_H PF01612 [flax] [poplar] DNA_pol_A_exo1 3'-5' exonuclease
Representative CDS sequence Show only first row Show all	>Lus10010357 pacid=23169554 polypeptide=Lus10010357 locus=Lus10010357.g ID=Lus10010357.BGIv1.0 annot-version=v1.0 ATGGACAAGACACTACGGGGATCACAGTTCACGATGAGCGACGGGTGCACCGTTGCGACAGTGGTGGTCAAAGACGAAGAATCCCATCTATGCCTCTACA CCCTCCTCCAAGACATGTTCAAAGTCGGCGACATGATTGTCGGACTAGACATTAAGTGGGGCTTCAAATCCACCTCTTCTTCTTCTACCTCTGTCAATCG ATCCACCAGCAGTCGTACTGCCACAAACAACATCCCTGTCGACCCAAACCAGCAGGCATCGCCGACATCGGAACGTAACAGCAAGGCCGGAACAGCTCCA CCGGAGCGTAACACCAAGATCGTGGAGCAACATGCCGCCCTAGTAACAATATGTACGAAGCTAGGCTGCATGCTGATCCGCCTCAACCCCAAGCTACCTA CATTGTCGCCGTCGTTGAGAAAGTTTCTCGCGATCAAGGAGATACTGTTTGTCGGGGTCCACATAAGGGAGGATCTGCACAGGATGAAGAAGATGTACGG CGTCGTTGTGAGGAACGCTGTGGAGCTGAGCGACTTGGCGGCCAAGATGAACGATCATCCGAGGTTTCTAGGGCTTAGTGCAAGGGATTTGTGTTCCAAA GTCTGCTCCATTAAGCTGGAGCAGAAGCCGTTTGTGGTGTTATGGTCGAACTGGTTCGATCCGACGCTGAGTAATGAGCAAGTCGAGTCGGCGACGACGG ATGCTTATGCGGCTTATAAGACTGGGAGGAAGATTATGGAGGGTGGTAGTAGTAGCGTCAAGAAGTTGTTTTATTGA
AA sequence Show only first row Show all	>Lus10010357 pacid=23169554 polypeptide=Lus10010357 locus=Lus10010357.g ID=Lus10010357.BGIv1.0 annot-version=v1.0 MDKTLRGSQFTMSDGCTVATVVVKDEESHLCLYTLLQDMFKVGDMIVGLDIKWGFKSTSSSSTSVNRSTSSRTATNNIPVDPNQQASPTSERNSKAGTAP PERNTKIVEQHAALVTICTKLGCMLIRLNPKLPTLSPSLRKFLAIKEILFVGVHIREDLHRMKKMYGVVVRNAVELSDLAAKMNDHPRFLGLSARDLCSK VCSIKLEQKPFVVLWSNWFDPTLSNEQVESATTDAYAAYKTGRKIMEGGSSSVKKLFY

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G11770			Polynucleotidyl transferase, r...		Lus10010357 [exp]	0	1
AT2G31420	B3		Domain of unknown function (DU...		Lus10039058 [exp]	3.2	0.8733
AT2G45910			U-box domain-containing protei...		Lus10018835 [exp]	4.2	0.8974
					Lus10000019 [exp]	9.3	0.8407
					Lus10007802 [exp]	18.4	0.8303
AT1G55200			Protein kinase protein with ad...		Lus10041608 [exp]	19.5	0.8404
					Lus10023010 [exp]	25.6	0.8204
					Lus10028090 [exp]	26.0	0.7849
AT5G58170		GDPDL7, SVL5	Glycerophosphodiester phosphod...		Lus10040036 [exp]	28.6	0.7953
AT4G20090		EMB1025	embryo defective 1025, Pentatr...		Lus10001223 [exp]	29.3	0.8036
AT5G62670		AHA11	H\(+\)-ATPase 11, H\(+\)-ATPas...		Lus10028203 [exp]	29.5	0.8301

Compare expression of checked genes

Lus10010357 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.