Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G60660 350 / 2e-122 unknown protein AT3G55860 41 / 0.0002 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036493 [exp] 427 / 1e-152 AT3G60660 338 / 2e-117 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G060000 [exp] 361 / 9e-127 AT3G60660 379 / 6e-134 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07160 [flax] [poplar] SKA1 Spindle and kinetochore-associated protein 1
Representative CDS sequence Show only first row Show all	>Lus10010359 pacid=23169557 polypeptide=Lus10010359 locus=Lus10010359.g ID=Lus10010359.BGIv1.0 annot-version=v1.0 ATGGCGCTGAAGGAAGCTGGTTCGTCGCTCGATTCTTTGATGTTGCGTTTCAACGCCAGAATCATCGAGCTTCAGGATCTAGTAGTCGCTCGTAACATGT ATCCGGCGAGCAGCGTCACCGATCTTTCGGCGATAGACACATCGCTGAAGGCCATGGAGCTTCAGGTTCAGGAAATTAAGGACCGCGTGCGGGAGGAAAC CGAAGCTATCCCTAAAGCTAAGAAGCTTATCGACGCATCGCTACGGCAGCAGAAGAAGTTACAGACTATGTCTGCATATGTTACAGCACATCTGCCTGCT AGATCAGCCATGACTAATTTTGATGCGAACAGAACATACGTGCCTACGGTAGCCTCTGATCAGCAACCTGGCTCCAGGTTTCTGACAGTCGACGAGGAGC CTGTGGCATTACCTAAGGAGAAAAAGAGCCGTGGCTCCCCACCTTTGTGGCACATAACCTCCGAGGAGCTTGATTCATTGTCTTCATACATGAGAGGGAG ACTCACTCTAGATAAGATCAATGCAGCTATCAATGACATGGCAGCATATGCGGATGCCAATGCTCATCTTATTACAGCTCCAAAAAAGAAGCTTGGGGAA AATGTGTGGGAGAAAGCGTTGGAACTGAGGGATATTGCGATGACTGAAGCAGCCAAGGGAAAGCACTTCTTTCTTGAGACCGATATAAAAGGACCGACCT TGAAACTCGACAACAGTGGAAAATCAATCTTAACTGTTCTACGCCACCTTGGACGCATCACTGAAACTCGCATTGGACACCACCGGGTAATCATTCTCTT AAAGAAGCACTAG
AA sequence Show only first row Show all	>Lus10010359 pacid=23169557 polypeptide=Lus10010359 locus=Lus10010359.g ID=Lus10010359.BGIv1.0 annot-version=v1.0 MALKEAGSSLDSLMLRFNARIIELQDLVVARNMYPASSVTDLSAIDTSLKAMELQVQEIKDRVREETEAIPKAKKLIDASLRQQKKLQTMSAYVTAHLPA RSAMTNFDANRTYVPTVASDQQPGSRFLTVDEEPVALPKEKKSRGSPPLWHITSEELDSLSSYMRGRLTLDKINAAINDMAAYADANAHLITAPKKKLGE NVWEKALELRDIAMTEAAKGKHFFLETDIKGPTLKLDNSGKSILTVLRHLGRITETRIGHHRVIILLKKH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G60660			unknown protein		Lus10010359 [exp]	0	1
AT4G29410			Ribosomal L28e protein family ...		Lus10012915 [exp]	2.2	0.9190
AT3G63240			DNAse I-like superfamily prote...		Lus10006904 [exp]	2.8	0.9129
AT3G46320			Histone superfamily protein (....		Lus10019956 [exp]	5.8	0.9176
AT5G22110		DPB2, CYL2, DBP...	CYCLOPS 2, DNA polymerase epsi...		Lus10026361 [exp]	6.5	0.9046
AT4G16807			unknown protein		Lus10010996 [exp]	6.5	0.9100
AT5G05510			Mad3/BUB1 homology region 1 (....		Lus10040947 [exp]	8.7	0.9174
AT5G24330		SDG34, ATXR6	SET DOMAIN PROTEIN 34, ARABIDO...		Lus10040794 [exp]	9.8	0.8853
AT2G34040			Apoptosis inhibitory protein 5...		Lus10013953 [exp]	11.8	0.8762
AT2G45260			Plant protein of unknown funct...		Lus10024190 [exp]	11.9	0.8532
AT1G78650		POLD3	DNA-directed DNA polymerases (...		Lus10013748 [exp]	13.2	0.8799

Compare expression of checked genes

Lus10010359 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.