Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G00170 251 / 3e-84 Plant VAMP (vesicle-associated membrane protein) family protein (.1) AT3G60600 202 / 6e-65 (AT)VAP, (AT)VAP, (AT)VAP, (AT)VAP, (AT)VAP, (AT)VAP, (AT)VAP, VAP27-1, VAP27, (AT)VAP, (AT)VAP, (A VAMP/SYNAPTOBREVIN-ASSOCIATED PROTEIN 27-1, vesicle associated protein (.1.2.3) AT2G45140 201 / 2e-64 PVA12 plant VAP homolog 12 (.1) AT2G23830 149 / 1e-45 PapD-like superfamily protein (.1) AT5G47180 151 / 2e-45 Plant VAMP (vesicle-associated membrane protein) family protein (.1), Plant VAMP (vesicle-associated membrane protein) family protein (.2) AT1G08820 137 / 3e-38 VAP27-2 vamp/synaptobrevin-associated protein 27-2 (.1.2) AT1G51270 135 / 1e-36 structural molecules;transmembrane receptors;structural molecules (.1.2.3.4) AT5G54110 59 / 2e-10 ATMAMI membrane-associated mannitol-induced (.1) AT4G21450 56 / 3e-09 PapD-like superfamily protein (.1.2.3) AT4G05060 54 / 2e-08 PapD-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036495 [exp] 348 / 1e-122 AT4G00170 316 / 4e-110 Plant VAMP (vesicle-associated membrane protein) family protein (.1) Lus10008512 [exp] 223 / 6e-73 AT2G45140 296 / 7e-102 plant VAP homolog 12 (.1) Lus10007463 [exp] 223 / 1e-72 AT3G60600 306 / 4e-105 VAMP/SYNAPTOBREVIN-ASSOCIATED PROTEIN 27-1, vesicle associated protein (.1.2.3) Lus10028937 [exp] 219 / 2e-68 AT3G60600 305 / 2e-101 VAMP/SYNAPTOBREVIN-ASSOCIATED PROTEIN 27-1, vesicle associated protein (.1.2.3) Lus10015885 [exp] 189 / 5e-60 AT2G45140 307 / 2e-106 plant VAP homolog 12 (.1) Lus10009279 [exp] 189 / 8e-55 AT4G00060 1034 / 0.0 maternal effect embryo arrest 44, Nucleotidyltransferase family protein (.1) Lus10000591 [exp] 148 / 5e-44 AT5G47180 277 / 5e-95 Plant VAMP (vesicle-associated membrane protein) family protein (.1), Plant VAMP (vesicle-associated membrane protein) family protein (.2) Lus10033837 [exp] 147 / 3e-41 AT1G08820 256 / 2e-80 vamp/synaptobrevin-associated protein 27-2 (.1.2) Lus10000032 [exp] 80 / 6e-19 AT2G45140 148 / 7e-46 plant VAP homolog 12 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G144800 [exp] 282 / 1e-96 AT4G00170 313 / 5e-109 Plant VAMP (vesicle-associated membrane protein) family protein (.1) Potri.003G076100 [exp] 238 / 2e-79 AT2G45140 262 / 1e-88 plant VAP homolog 12 (.1) Potri.001G152000 [exp] 236 / 1e-78 AT2G45140 296 / 6e-102 plant VAP homolog 12 (.1) Potri.014G060900 [exp] 223 / 2e-73 AT2G45140 328 / 9e-115 plant VAP homolog 12 (.1) Potri.002G144000 [exp] 216 / 1e-70 AT3G60600 298 / 1e-102 VAMP/SYNAPTOBREVIN-ASSOCIATED PROTEIN 27-1, vesicle associated protein (.1.2.3) Potri.013G031400 [exp] 143 / 7e-41 AT1G08820 273 / 5e-89 vamp/synaptobrevin-associated protein 27-2 (.1.2) Potri.005G044900 [exp] 141 / 5e-40 AT1G08820 261 / 4e-84 vamp/synaptobrevin-associated protein 27-2 (.1.2) Potri.003G082500 [exp] 134 / 1e-38 AT5G47180 281 / 1e-96 Plant VAMP (vesicle-associated membrane protein) family protein (.1), Plant VAMP (vesicle-associated membrane protein) family protein (.2) Potri.001G152100 [exp] 125 / 3e-35 AT5G47180 229 / 4e-76 Plant VAMP (vesicle-associated membrane protein) family protein (.1), Plant VAMP (vesicle-associated membrane protein) family protein (.2) Potri.010G031601 [exp] 123 / 2e-33 AT2G45140 112 / 4e-29 plant VAP homolog 12 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0556 [flax] [poplar] PapD-like PF00635 [flax] [poplar] Motile_Sperm MSP (Major sperm protein) domain
Representative CDS sequence Show only first row Show all	>Lus10010360 pacid=23169486 polypeptide=Lus10010360 locus=Lus10010360.g ID=Lus10010360.BGIv1.0 annot-version=v1.0 ATGGCTTCCGGGGATCTTCTCAACATCCACCCCACGGAACTAAAATTTCCATTTGAATTGAAGAAGCAGAGTTCATGTTCTATGCAACTCACTAACAAGT CGGATAGATACGTGGCCTTTAAGGTTAAGACAACGAATCCGAAGAAATACTGTGTCCGGCCCAACAGTGGCATTGTTTTGCCTGGAAGCTCATGCAATGT CACAGTTACAATGCAAGCACAAAAGGAAGCACCCCCGGAAATGCAGTGCAAGGACAAATTCTTGCTCCAAAGTGTTACGGCGCCTGATGGCGTGACGACC AAAGACATCACTCCAGAAATGTTTGAGAAGGAGGACGGGAAGGTTGTCGAGGAGGTTAAATTGCGTGTTGTGTATATCCCTGCAAATCCTCCTTCGCCAG TCCCTGAAGAATCTGAAGAAGGGTCTCCATCCAGATCTTCGAATGTCGAAGATGGAAATCAGGATGCTGAGTTGCTGAATGCAGTGTCAAGATCTTTTGA CCAGTCTAAGGAGAAATCAACAGAGGCATGGTCGATGATATCGAAGTTAACCGAAGAGAAAAACTCTGCCTTACAGCAAAATCAGAAGCTACGACAGGAG CTGGAGCTGATTCGAAAACGAAGCAACACTAACCGTGGCGGGTTTTCGTTACTAGTGGTACTGCTGGTTGGACTGATAGGTATCCTCGGTGGCTATGTAG TCAAGAGAACGTAG
AA sequence Show only first row Show all	>Lus10010360 pacid=23169486 polypeptide=Lus10010360 locus=Lus10010360.g ID=Lus10010360.BGIv1.0 annot-version=v1.0 MASGDLLNIHPTELKFPFELKKQSSCSMQLTNKSDRYVAFKVKTTNPKKYCVRPNSGIVLPGSSCNVTVTMQAQKEAPPEMQCKDKFLLQSVTAPDGVTT KDITPEMFEKEDGKVVEEVKLRVVYIPANPPSPVPEESEEGSPSRSSNVEDGNQDAELLNAVSRSFDQSKEKSTEAWSMISKLTEEKNSALQQNQKLRQE LELIRKRSNTNRGGFSLLVVLLVGLIGILGGYVVKRT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G00170			Plant VAMP (vesicle-associated...		Lus10010360 [exp]	0	1
AT3G13235		DDI1	DNA-damage inducible 1, ubiqui...		Lus10020464 [exp]	2.0	0.8935
AT2G16460			Protein of unknown function (D...		Lus10018079 [exp]	2.8	0.8642
AT4G20260		ATPCAP1	ARABIDOPSIS THALIANA PLASMA-ME...		Lus10038383 [exp]	7.7	0.8835
AT5G51780	bHLH	bHLH036	basic helix-loop-helix (bHLH) ...		Lus10031676 [exp]	10.0	0.8792
AT2G41150			unknown protein		Lus10022403 [exp]	13.1	0.8512
AT1G76880	Trihelix		Duplicated homeodomain-like su...		Lus10018888 [exp]	13.1	0.8818
AT2G42760			unknown protein		Lus10005429 [exp]	13.8	0.8703
AT3G63530		BB2, BB	BIG BROTHER, RING/U-box superf...		Lus10031275 [exp]	14.3	0.7856
AT4G24480			Protein kinase superfamily pro...		Lus10042868 [exp]	16.4	0.8622
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10001107 [exp]	16.6	0.8460

Compare expression of checked genes

Lus10010360 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.