Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G45190 166 / 7e-51 YABBY FIL, YAB1, AFO YABBY1, FILAMENTOUS FLOWER, ABNORMAL FLORAL ORGANS, Plant-specific transcription factor YABBY family protein (.1) AT4G00180 129 / 1e-36 YABBY YAB3 YABBY3, Plant-specific transcription factor YABBY family protein (.1.2) AT1G08465 123 / 1e-34 YABBY YAB2 YABBY2, Plant-specific transcription factor YABBY family protein (.1) AT2G26580 117 / 9e-33 YABBY YAB5 YABBY5, plant-specific transcription factor YABBY family protein (.1.2) AT1G23420 90 / 2e-21 YABBY INO, YAB4 INNER NO OUTER, Plant-specific transcription factor YABBY family protein (.1) AT1G69180 86 / 3e-20 YABBY CRC CRABS CLAW, Plant-specific transcription factor YABBY family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036496 [exp] 193 / 9e-62 AT2G45190 183 / 2e-58 YABBY1, FILAMENTOUS FLOWER, ABNORMAL FLORAL ORGANS, Plant-specific transcription factor YABBY family protein (.1) Lus10024603 [exp] 134 / 4e-38 AT2G45190 190 / 2e-60 YABBY1, FILAMENTOUS FLOWER, ABNORMAL FLORAL ORGANS, Plant-specific transcription factor YABBY family protein (.1) Lus10032240 [exp] 125 / 9e-35 AT2G45190 193 / 1e-61 YABBY1, FILAMENTOUS FLOWER, ABNORMAL FLORAL ORGANS, Plant-specific transcription factor YABBY family protein (.1) Lus10019407 [exp] 114 / 5e-31 AT2G26580 228 / 8e-77 YABBY5, plant-specific transcription factor YABBY family protein (.1.2) Lus10036811 [exp] 95 / 7e-24 AT1G69180 187 / 4e-61 CRABS CLAW, Plant-specific transcription factor YABBY family protein (.1) Lus10029135 [exp] 91 / 7e-22 AT1G23420 200 / 9e-65 INNER NO OUTER, Plant-specific transcription factor YABBY family protein (.1) Lus10013028 [exp] 89 / 4e-21 AT1G23420 193 / 4e-62 INNER NO OUTER, Plant-specific transcription factor YABBY family protein (.1) Lus10030596 [exp] 89 / 1e-20 AT1G23420 194 / 8e-62 INNER NO OUTER, Plant-specific transcription factor YABBY family protein (.1) Lus10000644 [exp] 85 / 6e-20 AT1G69180 177 / 5e-57 CRABS CLAW, Plant-specific transcription factor YABBY family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G066700 [exp] 184 / 2e-58 AT2G45190 277 / 3e-95 YABBY1, FILAMENTOUS FLOWER, ABNORMAL FLORAL ORGANS, Plant-specific transcription factor YABBY family protein (.1) Potri.002G145100 [exp] 167 / 1e-51 AT2G45190 265 / 2e-90 YABBY1, FILAMENTOUS FLOWER, ABNORMAL FLORAL ORGANS, Plant-specific transcription factor YABBY family protein (.1) Potri.003G112800 [exp] 160 / 7e-49 AT2G45190 243 / 1e-81 YABBY1, FILAMENTOUS FLOWER, ABNORMAL FLORAL ORGANS, Plant-specific transcription factor YABBY family protein (.1) Potri.001G120200 [exp] 159 / 1e-48 AT2G45190 236 / 4e-79 YABBY1, FILAMENTOUS FLOWER, ABNORMAL FLORAL ORGANS, Plant-specific transcription factor YABBY family protein (.1) Potri.009G000100 [exp] 122 / 1e-34 AT1G08465 215 / 3e-72 YABBY2, Plant-specific transcription factor YABBY family protein (.1) Potri.006G067800 [exp] 117 / 1e-32 AT2G26580 253 / 5e-87 YABBY5, plant-specific transcription factor YABBY family protein (.1.2) Potri.001G214700 [exp] 115 / 2e-31 AT1G08465 183 / 8e-59 YABBY2, Plant-specific transcription factor YABBY family protein (.1) Potri.018G129800 [exp] 113 / 7e-31 AT2G26580 250 / 5e-86 YABBY5, plant-specific transcription factor YABBY family protein (.1.2) Potri.010G042400 [exp] 100 / 2e-25 AT1G23420 191 / 3e-61 INNER NO OUTER, Plant-specific transcription factor YABBY family protein (.1) Potri.008G189000 [exp] 94 / 3e-23 AT1G23420 213 / 7e-70 INNER NO OUTER, Plant-specific transcription factor YABBY family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0114 [flax] [poplar] HMG-box PF04690 [flax] [poplar] YABBY YABBY protein
Representative CDS sequence Show only first row Show all	>Lus10010361 pacid=23169540 polypeptide=Lus10010361 locus=Lus10010361.g ID=Lus10010361.BGIv1.0 annot-version=v1.0 ATGTCATCATCCTCCGCATCCGCCGCCTCTCTTTCGCCGGATCACCACCACCTCTCCGGTGCCCTTTCCGACCAGCTCTGTTACGTCCATTGCAAATACT GCGACACTGTCCTCGCCGTACTCACTCTCCCTTTTCCTCTCCTTATCATCATCATCATCATTTCTTCTAGAGGACATGAGGAGCACTTCAGCACCGCCGC TGATGATGACCAACAACGGCGGCGGAAACAAAAACCACCAGCAACCCCCCGCCTAGAAAACCCCCCCCCCCTCCGGCATCAGCAGTTGGGTTTAAACGAC GTCGTATCATCGCCGTTTATGCCGATCCGTGGAGGTGGAAGCGGCGGCGGAGGAGGAACCATGGGGTTAGGGTTTGAGGACACTACCCCCAAGCCGGCTC CCGTTAACCGACCTCCAGAGAAGAGACAGAGAGTCCCTTCTGCTTACAACCGCTTCATCAAGGACGAGATCCAACGCATAAAGGCAGGGAATCCAGACAT CAGCCACAGGGAGGCCTTCAGTGCAGCTGCCAAGAATTGGGCTCATTTCCCACACATCCACTTTGGACTCATGCCTGATCATCAGCCCGTGAAGAAACCT AATCTCCTCCAGCAGTGGGCTCATTTCCCACACATCCACTTTGGACTCATGCCTGATCATCAGCCCGTGAAGAAACCTAATCTCCTCCAGCAGGAAGCAG AAGATCAAATGGCACTGATCAAAGATGGGTTCTTCCCTCCAGCCAATCTTGGTGTTACACCCTACTGA
AA sequence Show only first row Show all	>Lus10010361 pacid=23169540 polypeptide=Lus10010361 locus=Lus10010361.g ID=Lus10010361.BGIv1.0 annot-version=v1.0 MSSSSASAASLSPDHHHLSGALSDQLCYVHCKYCDTVLAVLTLPFPLLIIIIIISSRGHEEHFSTAADDDQQRRRKQKPPATPRLENPPPLRHQQLGLND VVSSPFMPIRGGGSGGGGGTMGLGFEDTTPKPAPVNRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGLMPDHQPVKKP NLLQQWAHFPHIHFGLMPDHQPVKKPNLLQQEAEDQMALIKDGFFPPANLGVTPY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G45190	YABBY	FIL, YAB1, AFO	YABBY1, FILAMENTOUS FLOWER, AB...		Lus10010361 [exp]	0	1
AT3G18010	HD	WOX1	WUSCHEL related homeobox 1 (.1...		Lus10042007 [exp]	1.7	0.9782
AT4G39490		CYP96A10	"cytochrome P450, family 96, s...		Lus10002525 [exp]	2.0	0.9773
AT3G49950	GRAS		GRAS family transcription fact...		Lus10039709 [exp]	2.4	0.9700
AT3G44830			Lecithin:cholesterol acyltrans...		Lus10043360 [exp]	3.2	0.9393
AT4G03270		CYCD6;1	Cyclin D6;1 (.1)		Lus10031608 [exp]	4.9	0.9669
AT3G18010	HD	WOX1	WUSCHEL related homeobox 1 (.1...		Lus10018011 [exp]	4.9	0.9536
AT2G45190	YABBY	FIL, YAB1, AFO	YABBY1, FILAMENTOUS FLOWER, AB...		Lus10036496 [exp]	5.0	0.9628
AT2G26580	YABBY	YAB5	YABBY5, plant-specific transcr...		Lus10030105 [exp]	7.2	0.9362
AT4G15880		ATESD4, ESD4	EARLY IN SHORT DAYS 4, Cystein...		Lus10035382 [exp]	7.3	0.9416
AT2G28610	HD	PRS1, PRS, WOX3	WUSCHEL RELATED HOMEOBOX 3, PR...		Lus10038480 [exp]	7.5	0.9275

Compare expression of checked genes

Lus10010361 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.