Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G60720 208 / 4e-65 PDLP8 plasmodesmata-located protein 8 (.1) AT5G37660 138 / 5e-38 PDLP7 plasmodesmata-located protein 7 (.1.2) AT2G01660 129 / 6e-35 PDLP6 plasmodesmata-located protein 6 (.1.2) AT1G70690 123 / 2e-32 HWI1, PDLP5 PLASMODESMATA-LOCATED PROTEIN 5, HOPW1-1-INDUCED GENE1, Receptor-like protein kinase-related family protein (.1) AT5G48540 81 / 3e-17 receptor-like protein kinase-related family protein (.1) AT2G33330 79 / 2e-16 PDLP3 plasmodesmata-located protein 3 (.1) AT1G04520 75 / 6e-15 PDLP2 plasmodesmata-located protein 2 (.1) AT3G22060 67 / 2e-12 Receptor-like protein kinase-related family protein (.1) AT4G21230 64 / 6e-11 CRK27 cysteine-rich RLK (RECEPTOR-like protein kinase) 27 (.1) AT1G61750 62 / 2e-10 Receptor-like protein kinase-related family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036497 [exp] 378 / 3e-131 AT3G60720 210 / 9e-67 plasmodesmata-located protein 8 (.1) Lus10020814 [exp] 131 / 3e-35 AT5G37660 311 / 2e-106 plasmodesmata-located protein 7 (.1.2) Lus10016710 [exp] 119 / 1e-30 AT2G01660 318 / 1e-108 plasmodesmata-located protein 6 (.1.2) Lus10027145 [exp] 85 / 1e-18 AT3G22060 253 / 8e-85 Receptor-like protein kinase-related family protein (.1) Lus10001052 [exp] 85 / 2e-18 AT5G43980 234 / 1e-75 PLASMODESMATA-LOCATED PROTEIN 1A, plasmodesmata-located protein 1 (.1) Lus10025875 [exp] 74 / 1e-14 AT5G48540 261 / 2e-87 receptor-like protein kinase-related family protein (.1) Lus10023726 [exp] 74 / 2e-14 AT1G04520 389 / 2e-136 plasmodesmata-located protein 2 (.1) Lus10014475 [exp] 74 / 2e-14 AT1G04520 391 / 1e-137 plasmodesmata-located protein 2 (.1) Lus10038227 [exp] 69 / 3e-13 AT5G48540 261 / 1e-87 receptor-like protein kinase-related family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G067000 [exp] 209 / 3e-65 AT3G60720 306 / 8e-105 plasmodesmata-located protein 8 (.1) Potri.002G145400 [exp] 187 / 8e-57 AT3G60720 243 / 8e-80 plasmodesmata-located protein 8 (.1) Potri.004G086000 [exp] 136 / 2e-37 AT5G37660 301 / 1e-102 plasmodesmata-located protein 7 (.1.2) Potri.017G130800 [exp] 136 / 2e-37 AT5G37660 314 / 1e-107 plasmodesmata-located protein 7 (.1.2) Potri.008G133500 [exp] 131 / 3e-35 AT2G01660 332 / 1e-114 plasmodesmata-located protein 6 (.1.2) Potri.010G108100 [exp] 124 / 1e-32 AT2G01660 265 / 2e-88 plasmodesmata-located protein 6 (.1.2) Potri.002G257300 [exp] 83 / 1e-17 AT1G04520 243 / 2e-79 plasmodesmata-located protein 2 (.1) Potri.002G249600 [exp] 81 / 2e-17 AT5G48540 256 / 7e-86 receptor-like protein kinase-related family protein (.1) Potri.010G065800 [exp] 76 / 4e-15 AT1G04520 337 / 2e-116 plasmodesmata-located protein 2 (.1) Potri.008G171700 [exp] 74 / 1e-14 AT1G04520 349 / 3e-121 plasmodesmata-located protein 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01657 [flax] [poplar] Stress-antifung Salt stress response/antifungal
Representative CDS sequence Show only first row Show all	>Lus10010362 pacid=23169478 polypeptide=Lus10010362 locus=Lus10010362.g ID=Lus10010362.BGIv1.0 annot-version=v1.0 ATGAATAGAACTGTTCAACACTTGGAACCACCACCATCAACATCAGCATCACAAATCTCAACTCCTCTGCTTATCATCATTTCCCTACTCATTATCATAC TCTCTCATCAAACCCTAGCCAGCTTCCCACAATACGACATCTTCATCTACGCCACTTGCTCCCAAGCCAAATCCCAACCAGACTCCCTCTTCCAAACCAA CCTCAAATCCTTCCTCTACTCACTCTACACCTCCTCCTCCCACTCTCCATCCAACACCTCCACCGACAGCGGTGGACCCCTTTACGGCCTCTACCAGTGT CGCGGGGACCTGACCCTAGTCGACTGCTCTCGATGCATCGGGAGCGCTGTCGACCAGCTAGGGCTTGAGTGTCCTAACAATCTGGAAGCATCCCTCCAGC TAGAGGGATGCTTCCTCACGTACGGGCAGGTTGACTACACGGGGAAGCCCGACACAGGTGTCAGGTTCAAGAAATGTAGCACACACCTTGTGGAGGGTGA TGATGTAAATTTCGTCCATCGAAGGGATGATGTGTTGGAAGAGTTGAAGGAGGGGGTGGGGGCCACTGGGTTTAAGGTGAGCACTTCCGGGTTGGTGGAA GGGTATGCTCAGTGTTTGAGTGATTTGGTGAGCTCAGGTGATGACTGTGCGAGTTGCGTGACAGAGGCGGCGGGGAAGTTGAAGCAGCTGTGTGGGTCCG CGGCGGCGGCAGAGGTGTACTTGGGGAAATGTTATGCTCGGTATTGGACTTCCGGTTATTATGACTTCACTCCTCCAGAATCCAACAACAACGACGGGAT GGGGAAGACGGTAACCATTATAGTTGGAGTAGTCGCTGGTTTAGCGATTCTGGTTGTAGTTCTCTCCATGATTTGTAGAAAATCAATCGGTTCGATCACA CATTCCCTCGTACTATATATAAATAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTAATGGTTATGAAAACTG AAATAATTTCTTTCGTTTTGCAGGGGTTAGAAGGACGTAGCAAAAATGGTTTCGGGGTTTTATTTTTGAATTCAAGCCGTGTATTTGATACATATGGTAG ATTCGAATCTCGCGTATGA
AA sequence Show only first row Show all	>Lus10010362 pacid=23169478 polypeptide=Lus10010362 locus=Lus10010362.g ID=Lus10010362.BGIv1.0 annot-version=v1.0 MNRTVQHLEPPPSTSASQISTPLLIIISLLIIILSHQTLASFPQYDIFIYATCSQAKSQPDSLFQTNLKSFLYSLYTSSSHSPSNTSTDSGGPLYGLYQC RGDLTLVDCSRCIGSAVDQLGLECPNNLEASLQLEGCFLTYGQVDYTGKPDTGVRFKKCSTHLVEGDDVNFVHRRDDVLEELKEGVGATGFKVSTSGLVE GYAQCLSDLVSSGDDCASCVTEAAGKLKQLCGSAAAAEVYLGKCYARYWTSGYYDFTPPESNNNDGMGKTVTIIVGVVAGLAILVVVLSMICRKSIGSIT HSLVLYINXXXXXXXXXXXXXXXXXXXLMVMKTEIISFVLQGLEGRSKNGFGVLFLNSSRVFDTYGRFESRV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G60720		PDLP8	plasmodesmata-located protein ...		Lus10010362 [exp]	0	1
AT1G53540			HSP20-like chaperones superfam...		Lus10017202 [exp]	1.0	0.9712
AT5G27690			Heavy metal transport/detoxifi...		Lus10020906 [exp]	1.4	0.9691
AT4G27290			S-locus lectin protein kinase ...		Lus10016862 [exp]	1.7	0.9674
AT4G18340			Glycosyl hydrolase superfamily...		Lus10042825 [exp]	3.2	0.9551
AT1G02170		AtMCP1b, ATMC1,...	LSD ONE LIKE 3, ARABIDOPSIS TH...		Lus10009321 [exp]	3.9	0.9613
AT1G19715			Mannose-binding lectin superfa...		Lus10024290 [exp]	4.2	0.9609
AT1G29380			Carbohydrate-binding X8 domain...		Lus10004600 [exp]	4.9	0.9635
AT1G07400			HSP20-like chaperones superfam...		Lus10021109 [exp]	5.7	0.9571
AT5G04890		RTM2	RESTRICTED TEV MOVEMENT 2, HSP...		Lus10008946 [exp]	6.9	0.9532
AT4G24250		ATMLO13, MLO13	MILDEW RESISTANCE LOCUS O 13, ...		Lus10042397 [exp]	7.3	0.9562

Compare expression of checked genes

Lus10010362 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.