Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10010364 pacid=23174857 polypeptide=Lus10010364 locus=Lus10010364.g ID=Lus10010364.BGIv1.0 annot-version=v1.0 ATGCAAGAATGGGATGCGAAACTGCTTCAGTTAGGCGAAGTCACTTTTAAACCATTCAACGTCAACCCTCACACCACACCTACCTTTCAGCAAAGGCTTG CCAATGTTGTAAAGCAGAAAATGTTTACTGACGACCCTCAACCTTTTATTAGAAGCTTACTCGTCAATGCCTTTGTTGAAAAAGTAGGCCAACACTCTAG CCCTAACAAGAAAGGGAAAATGATTGATTCTCCATCACATGCACACTCCACCAAACGGCAAGCAAGGGCAATTGAAAACTTCCTCGCGTCAAACATGGAG GAGACCATTGGAGGCTTCGACTTGGCATGGCCCTATCAAGCATTATACGTGTTATCGCAGCTGGAGCTTCATCTTCCATTTCTGCGGCGTAGTGTAGGTC AAATGTTATACATGAATACTGCCTCAAAAAACATCAAGTCATGGATGGAAGCCATCGAGATATCCAAGAAGCTTCAAAATACCATGGTCCATGAGCAGAG TACAAGGATCTCTTCGTCCATAAACGTACAAGATAAGCTTGTCAAAACCAAAGCGATGTCAGATCTAATCACGAGTGCATGA
AA sequence Show only first row Show all	>Lus10010364 pacid=23174857 polypeptide=Lus10010364 locus=Lus10010364.g ID=Lus10010364.BGIv1.0 annot-version=v1.0 MQEWDAKLLQLGEVTFKPFNVNPHTTPTFQQRLANVVKQKMFTDDPQPFIRSLLVNAFVEKVGQHSSPNKKGKMIDSPSHAHSTKRQARAIENFLASNME ETIGGFDLAWPYQALYVLSQLELHLPFLRRSVGQMLYMNTASKNIKSWMEAIEISKKLQNTMVHEQSTRISSSINVQDKLVKTKAMSDLITSA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10010364 [exp]	0	1
AT4G12690			Plant protein of unknown funct...		Lus10006223 [exp]	6.8	0.9389
AT2G17650			AMP-dependent synthetase and l...		Lus10041826 [exp]	10.8	0.9146
AT1G22690			Gibberellin-regulated family p...		Lus10009421 [exp]	12.9	0.9462
AT4G38540			FAD/NAD(P)-binding oxidoreduct...		Lus10016398 [exp]	17.4	0.9038
AT1G75900		EXL3	GDSL-like Lipase/Acylhydrolase...		Lus10003717 [exp]	22.2	0.9302
AT2G15580			RING/U-box superfamily protein...		Lus10030120 [exp]	26.5	0.9262
					Lus10004293 [exp]	31.2	0.9219
AT1G11545		XTH8	xyloglucan endotransglucosylas...		Lus10007645 [exp]	34.6	0.9194
AT2G20760			Clathrin light chain protein (...		Lus10018582 [exp]	35.5	0.9219
AT2G46640			unknown protein		Lus10030218 [exp]	39.6	0.9072

Compare expression of checked genes

Lus10010364 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.