Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G58520 752 / 0 RXW8 lipases;hydrolases, acting on ester bonds (.1.2.3) AT1G10090 688 / 0 Early-responsive to dehydration stress protein (ERD4) (.1) AT3G01100 459 / 8e-153 ATHYP1, HYP1 ARABIDOPSIS THALIANA HYPOTHETICAL PROTEIN 1, hypothetical protein 1 (.1.2) AT1G69450 452 / 5e-150 Early-responsive to dehydration stress protein (ERD4) (.1), Early-responsive to dehydration stress protein (ERD4) (.2) AT3G54510 346 / 4e-109 Early-responsive to dehydration stress protein (ERD4) (.1), Early-responsive to dehydration stress protein (ERD4) (.2) AT1G11960 282 / 2e-84 ERD (early-responsive to dehydration stress) family protein (.1) AT4G02900 281 / 6e-84 ERD (early-responsive to dehydration stress) family protein (.1) AT4G22120 276 / 3e-82 ERD (early-responsive to dehydration stress) family protein AT4G04340 271 / 2e-80 ERD (early-responsive to dehydration stress) family protein (.1), ERD (early-responsive to dehydration stress) family protein (.2), ERD (early-responsive to dehydration stress) family protein (.3) AT3G21620 267 / 5e-79 ERD (early-responsive to dehydration stress) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004597 [exp] 1054 / 0 AT1G58520 845 / 0.0 lipases;hydrolases, acting on ester bonds (.1.2.3) Lus10004550 [exp] 1037 / 0 AT1G58520 842 / 0.0 lipases;hydrolases, acting on ester bonds (.1.2.3) Lus10032801 [exp] 900 / 0 AT1G58520 483 / 7e-163 lipases;hydrolases, acting on ester bonds (.1.2.3) Lus10005223 [exp] 444 / 2e-146 AT3G01100 895 / 0.0 ARABIDOPSIS THALIANA HYPOTHETICAL PROTEIN 1, hypothetical protein 1 (.1.2) Lus10030431 [exp] 442 / 7e-146 AT1G69450 867 / 0.0 Early-responsive to dehydration stress protein (ERD4) (.1), Early-responsive to dehydration stress protein (ERD4) (.2) Lus10037139 [exp] 438 / 3e-144 AT1G69450 890 / 0.0 Early-responsive to dehydration stress protein (ERD4) (.1), Early-responsive to dehydration stress protein (ERD4) (.2) Lus10043455 [exp] 323 / 6e-100 AT3G54510 883 / 0.0 Early-responsive to dehydration stress protein (ERD4) (.1), Early-responsive to dehydration stress protein (ERD4) (.2) Lus10002133 [exp] 283 / 3e-84 AT1G32090 1136 / 0.0 early-responsive to dehydration stress protein (ERD4) (.1) Lus10035300 [exp] 282 / 3e-84 AT3G21620 1146 / 0.0 ERD (early-responsive to dehydration stress) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G113800 [exp] 886 / 0 AT1G58520 827 / 0.0 lipases;hydrolases, acting on ester bonds (.1.2.3) Potri.004G115800 [exp] 489 / 2e-164 AT3G01100 866 / 0.0 ARABIDOPSIS THALIANA HYPOTHETICAL PROTEIN 1, hypothetical protein 1 (.1.2) Potri.008G091200 [exp] 468 / 4e-156 AT1G69450 872 / 0.0 Early-responsive to dehydration stress protein (ERD4) (.1), Early-responsive to dehydration stress protein (ERD4) (.2) Potri.010G164100 [exp] 465 / 9e-155 AT1G69450 844 / 0.0 Early-responsive to dehydration stress protein (ERD4) (.1), Early-responsive to dehydration stress protein (ERD4) (.2) Potri.003G200900 [exp] 367 / 7e-117 AT3G54510 886 / 0.0 Early-responsive to dehydration stress protein (ERD4) (.1), Early-responsive to dehydration stress protein (ERD4) (.2) Potri.014G156100 [exp] 281 / 9e-84 AT3G21620 1104 / 0.0 ERD (early-responsive to dehydration stress) family protein (.1) Potri.004G006000 [exp] 271 / 4e-80 AT4G22120 1139 / 0.0 ERD (early-responsive to dehydration stress) family protein Potri.002G226800 [exp] 267 / 7e-79 AT3G21620 1105 / 0.0 ERD (early-responsive to dehydration stress) family protein (.1) Potri.003G099800 [exp] 262 / 1e-76 AT1G32090 1094 / 0.0 early-responsive to dehydration stress protein (ERD4) (.1) Potri.004G006100 [exp] 261 / 1e-76 AT4G22120 1113 / 0.0 ERD (early-responsive to dehydration stress) family protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0416 [flax] [poplar] Anoctamin-like PF02714 [flax] [poplar] RSN1_7TM Calcium-dependent channel, 7TM region, putative phosphate
Representative CDS sequence Show only first row Show all	>Lus10010365 pacid=23174868 polypeptide=Lus10010365 locus=Lus10010365.g ID=Lus10010365.BGIv1.0 annot-version=v1.0 ATGGAATTTGCAGCCCTTTTAACGTCGGCGGGAATCAATATAGCTATGTGCGTGTTGCTTTTCACACTCTACTCTGTTCTAAGAAAGCAGCCAAGTAATA GGATTGTGTATTTTGGCCGGAGGCTCGCCTCGGTACAGTTGAGAAGCAACGATCCTTTCTCCTTGGAGCGATTTGTCCCCTCTACTAGTTGGTTAATTAA GGCTTGGGAAACATCTGAAGACGAAATATTGACTGTTGGTGGGTTAGATGCTGTTGTTTTCCAGAGAATACTTGTCTTCAGTATCCGTATCTTCTCCATT TCTGCCATCATTTGCGTGTTTCTAGTGCTTCCGGTGAACTACTATGGGAAAGAAATGCAACATAAAAGGCTTGGAGCAGAATCGTTGGATGTTTTCACTA TTGGAAATGTTCATGAAGGTTCAGTATGGCTTTGGGCTCACTGTCTTGCATTATACACAATATCCTGTTCGACTTGTGCTCTTCTCTACTTTGAATACAG AAGTATCACGAAAATGAGGCTAACACACCTAAAAGGATCTCCTACAAACCCTAGCCATTTTAGCGTGTTGGTTCGATCCATCCCGTGGGTTCCAGGAGAA ACATACAGCGATACACTGAAAAAGTTCTTTACAACTTATTATCCAACAAGCTACTTGGCTCACCAGATGGTTCATCATTCTAGTGTTATTCAGAAATTGA TGGTCGAGGCAGAGAAGATGTGCAAGATGCTTAGCGCTGTTTCATCTGATCAAGGAAGTTTAAGGCCTTTCTGTTTTTGTTCGTCAAATACACTTTCATT TCACATTCTTCAAGACCAACCAGAAAATGAAAGTGTTGGTGGGAGCATCAAATATTCTGATTTTGAAATTGCTCCACCAGATGATGAATGTTCTGTTGCT TTTGTCTTCTTCAAGACTCGATATGCGGCTGTGGTTGCCACACAGATGCTGCAATCTACAAATCCTATGTTGTGGGTGACACAAGAAGCACCAGAACCAC ATGATGTTTTATGGTCAAGCTTATCTATACCCTATAAGCAGCTTTGGCTCCGAAAGATAGCTACGCTTCTCGCTGCAATAGTATTCATGTTTCTGTTTCT TGTCCCAGTGACATTTGTTCAAGGCTTGACTCAACTGGAAAAGCTGTCAAAGACTTTTCCTTTCTTAAGAGGGCTTTTGAGGAACGACTCTATAAATCAT GTGGTGACAGGTTACTTGCCTAGCGTGATCTTGATGTTATTTTTATACACTGTGCCACCAATGATGATGCGCTTTTCAGCAATAGAAGCACCTGTGTCTC GCAGTAGACGAAAAAAGAGCGCATGCTTGAAAATATTGTACTTCACTATCTGGAATGTTTTCTTCGTTAACGTTCTATCAGGTTCTGTTATTAGTCAATT AAATGTCTTCTCCACTGTAAGAGACATACCGCTGGAACTTGCCAGAGCAATACCCACCCAGGCTAGCTTCTTCATGACGTACGTGTTCACATCAGGTTGG GCAGGGTTGGCCTGTGAATTAATGCAACTTTTCGCATTCGTTTGCAACCTGTTCAAAAAGTTCATCCTCAGAAATTATGAAGATGCACATGATTGGCTGA TGGCCTTCCCATACCATACAGAAATCCCAAGAGTTCTCTTATTTGTACTCATCGGGTTCACCTGTTCAATTATGGCACCTTTAATACTACCATTTTTGCT GATTTACTTTTTCATGGCGTACCTCATATATAGAAATCAGGACTCTCCAGTTGCATCCGGCTTCACCATCCCCCTGATCGTCTGCACGCTTCTGTTTAGC GAATATTGCAGACAGCAGTTTCTACCAGTTTTTAGGAAACATGCCGCTCAGGTTTTGATAGACATGGATAGAGAAGATGAAAATGGGGATAGATTTGAAG ACATTTACAACCAGTTGCGTAATGCATATTGCCAGATACAATTAGCTTCACAGGGACTCCGGGCAGCTCGACCAGTATCACAAGTAACTGATATCCCTGA GAACATCTCAGGTTCTGCAGCCCACAAGCCAGGTTCGTTTAGCCAGTTTGTTGGACTCTGTTACATTATTATGCTTTTGAATCAAATAGACTCCTCCTAA
AA sequence Show only first row Show all	>Lus10010365 pacid=23174868 polypeptide=Lus10010365 locus=Lus10010365.g ID=Lus10010365.BGIv1.0 annot-version=v1.0 MEFAALLTSAGINIAMCVLLFTLYSVLRKQPSNRIVYFGRRLASVQLRSNDPFSLERFVPSTSWLIKAWETSEDEILTVGGLDAVVFQRILVFSIRIFSI SAIICVFLVLPVNYYGKEMQHKRLGAESLDVFTIGNVHEGSVWLWAHCLALYTISCSTCALLYFEYRSITKMRLTHLKGSPTNPSHFSVLVRSIPWVPGE TYSDTLKKFFTTYYPTSYLAHQMVHHSSVIQKLMVEAEKMCKMLSAVSSDQGSLRPFCFCSSNTLSFHILQDQPENESVGGSIKYSDFEIAPPDDECSVA FVFFKTRYAAVVATQMLQSTNPMLWVTQEAPEPHDVLWSSLSIPYKQLWLRKIATLLAAIVFMFLFLVPVTFVQGLTQLEKLSKTFPFLRGLLRNDSINH VVTGYLPSVILMLFLYTVPPMMMRFSAIEAPVSRSRRKKSACLKILYFTIWNVFFVNVLSGSVISQLNVFSTVRDIPLELARAIPTQASFFMTYVFTSGW AGLACELMQLFAFVCNLFKKFILRNYEDAHDWLMAFPYHTEIPRVLLFVLIGFTCSIMAPLILPFLLIYFFMAYLIYRNQDSPVASGFTIPLIVCTLLFS EYCRQQFLPVFRKHAAQVLIDMDREDENGDRFEDIYNQLRNAYCQIQLASQGLRAARPVSQVTDIPENISGSAAHKPGSFSQFVGLCYIIMLLNQIDSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G58520		RXW8	lipases;hydrolases, acting on ...		Lus10010365 [exp]	0	1
AT5G53760		ATMLO11, MLO11	MILDEW RESISTANCE LOCUS O 11, ...		Lus10032669 [exp]	1.7	0.7578
AT1G19430			S-adenosyl-L-methionine-depend...		Lus10000715 [exp]	4.9	0.7467
AT1G01950		AtKINUb, ARK2	Arabidopsis thaliana KINESIN U...		Lus10038696 [exp]	7.3	0.7132
AT5G52560		ATUSP	UDP-sugar pyrophosphorylase (....		Lus10000971 [exp]	8.2	0.7306
AT3G18000		XPL1, NMT1, XIP...	XIPOTL 1, N-METHYLTRANSFERASE ...		Lus10042006 [exp]	14.2	0.7139
AT4G31600			UDP-N-acetylglucosamine (UAA) ...		Lus10020119 [exp]	19.2	0.6980
AT1G11720		ATSS3	starch synthase 3 (.1.2)		Lus10006780 [exp]	19.4	0.6637
AT2G38840			Guanylate-binding family prote...		Lus10024841 [exp]	24.7	0.7098
AT5G28350			Quinoprotein amine dehydrogena...		Lus10005119 [exp]	25.4	0.7333
AT3G51460		rhd4	ROOT HAIR DEFECTIVE4, Phosphoi...		Lus10016697 [exp]	27.4	0.7161

Compare expression of checked genes

Lus10010365 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.