Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011950 [exp] 227 / 5e-74 ND 40 / 0.001 Lus10027047 [exp] 229 / 9e-72 AT1G17930 119 / 1e-28 Aminotransferase-like, plant mobile domain family protein (.1) Lus10012639 [exp] 209 / 3e-67 ND / Lus10042635 [exp] 210 / 7e-67 AT3G53010 78 / 2e-16 Domain of unknown function (DUF303) (.1) Lus10011962 [exp] 205 / 6e-66 ND / Lus10008435 [exp] 177 / 2e-52 AT5G37290 184 / 6e-56 ARM repeat superfamily protein (.1.2) Lus10021761 [exp] 163 / 3e-50 ND / Lus10025371 [exp] 148 / 7e-43 ND / Lus10020839 [exp] 135 / 1e-39 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10010369 pacid=23174871 polypeptide=Lus10010369 locus=Lus10010369.g ID=Lus10010369.BGIv1.0 annot-version=v1.0 ATGAGAGGGAAAGAAAAGCAAGCGGGCATCTTAGATCGGATGAAAGAGCAAGTGATCACCGCTTCGAGGCGGAAAGAGGAAGATGCAGCAAAGAAGAACA AGAAGTTGAAAATCTACTGCTCCCCTGACCGGTACCCTCCTGTTACGTACCCGGTTAGGTCGTATCCGGAAGATGATGACGAGGATGAGGGTCCACCGCT GGGGTTTGAGTATGATTACACACAGACTTCCGCCCACATGGCTTTTCCGCACACGGCTTTTCCACACCTCGTTTCTACAGGCTCGTCACATGCCTCCCCG AGTGTTGGCGTTAGTGGACTGGACTGGCAGGGACTGAGTCGTACTTGGGAGCTTACTGCGGGGCTTCCAGATGGTGGACCGAGGACACTGACAGTGATCC CTAGCTTCGGAGGTCACATTGCACACTACTTGTGGCAGTCGGGCGATGGATACAGGGATCTAAAGGTCTTCAGTGCTGCTGTAGATTCGAATCTGTTTGC TGATGTAGTGCTGCTGTTTGTTGATGCAGTGCTGTTGTTTGCTTATGCAGTGCTTGCTGATGCAGTGTTGTTGCATGCTAGATCACCACGGGGATCCGTG GATATGCGGGATTCGTCACCGGACGGTGGTGGCTTGGGATTCAGCCCCAAAATGCCACACCGGGCGGGGGCGGGAAAACCTGCTGCTCAATGTGGGCGGG GAACAAATCCAGGGTACCCGTCCCCGATCCATCCCGATGCCAAGCCTATTCTCAAGATCCTGCTGCCGAAGCAATGTTGCTGTTGA
AA sequence Show only first row Show all	>Lus10010369 pacid=23174871 polypeptide=Lus10010369 locus=Lus10010369.g ID=Lus10010369.BGIv1.0 annot-version=v1.0 MRGKEKQAGILDRMKEQVITASRRKEEDAAKKNKKLKIYCSPDRYPPVTYPVRSYPEDDDEDEGPPLGFEYDYTQTSAHMAFPHTAFPHLVSTGSSHASP SVGVSGLDWQGLSRTWELTAGLPDGGPRTLTVIPSFGGHIAHYLWQSGDGYRDLKVFSAAVDSNLFADVVLLFVDAVLLFAYAVLADAVLLHARSPRGSV DMRDSSPDGGGLGFSPKMPHRAGAGKPAAQCGRGTNPGYPSPIHPDAKPILKILLPKQCCC

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10010369 [exp]	0	1
AT3G54460			SNF2 domain-containing protein...		Lus10024158 [exp]	9.7	0.8014
AT2G25570			binding (.1.2.3)		Lus10001073 [exp]	23.6	0.7291
AT3G03420			Ku70-binding family protein (....		Lus10032105 [exp]	28.2	0.7525
AT2G19800		MIOX2	myo-inositol oxygenase 2 (.1)		Lus10041030 [exp]	34.0	0.7581
AT1G27520			Glycosyl hydrolase family 47 p...		Lus10042143 [exp]	36.8	0.7515
AT1G73350			unknown protein		Lus10026363 [exp]	50.7	0.7447
AT4G37480			Chaperone DnaJ-domain superfam...		Lus10019286 [exp]	54.1	0.7326
AT5G37850		SOS4, ATSOS4	SALT OVERLY SENSITIVE 4, pfkB-...		Lus10010977 [exp]	58.0	0.7117
AT4G32820			Tetratricopeptide repeat (TPR)...		Lus10005496 [exp]	60.9	0.7414
AT5G56550		ATOXS3	oxidative stress 3 (.1)		Lus10034985 [exp]	62.0	0.7418

Compare expression of checked genes

Lus10010369 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.