Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G34110 822 / 0 PABP2, PAB2, ATPAB2 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) AT1G49760 804 / 0 PABP8, PAB8 poly(A) binding protein 8 (.1), poly(A) binding protein 8 (.2) AT2G23350 749 / 0 PABP4, PAB4 poly(A) binding protein 4 (.1) AT1G71770 579 / 0 PAB5 poly(A)-binding protein 5 (.1), poly(A)-binding protein 5 (.2) AT1G22760 524 / 3e-179 PAB3 poly(A) binding protein 3 (.1) AT1G34140 348 / 4e-114 PAB1 poly(A) binding protein 1 (.1) AT2G36660 342 / 5e-109 PAB7 poly(A) binding protein 7 (.1) AT3G16380 310 / 8e-98 PAB6 poly(A) binding protein 6 (.1) AT2G18510 122 / 5e-30 EMB2444 embryo defective 2444, RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT1G47490 113 / 2e-26 ATRBP47C RNA-binding protein 47C (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010042 [exp] 1175 / 0 AT4G34110 865 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) Lus10002835 [exp] 875 / 0 AT4G34110 918 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) Lus10027886 [exp] 831 / 0 AT4G34110 922 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) Lus10014392 [exp] 416 / 3e-137 AT2G36660 594 / 0.0 poly(A) binding protein 7 (.1) Lus10023885 [exp] 400 / 4e-131 AT2G36660 570 / 0.0 poly(A) binding protein 7 (.1) Lus10027733 [exp] 399 / 3e-130 AT2G36660 569 / 0.0 poly(A) binding protein 7 (.1) Lus10035556 [exp] 399 / 6e-125 AT2G36670 623 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Lus10021396 [exp] 281 / 3e-86 AT1G49760 351 / 6e-114 poly(A) binding protein 8 (.1), poly(A) binding protein 8 (.2) Lus10019838 [exp] 144 / 2e-37 AT1G49760 192 / 3e-55 poly(A) binding protein 8 (.1), poly(A) binding protein 8 (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G124200 [exp] 924 / 0 AT1G49760 822 / 0.0 poly(A) binding protein 8 (.1), poly(A) binding protein 8 (.2) Potri.014G025400 [exp] 923 / 0 AT1G49760 789 / 0.0 poly(A) binding protein 8 (.1), poly(A) binding protein 8 (.2) Potri.009G099300 [exp] 855 / 0 AT4G34110 850 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) Potri.001G304000 [exp] 852 / 0 AT4G34110 837 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) Potri.005G198500 [exp] 664 / 0 AT1G22760 623 / 0.0 poly(A) binding protein 3 (.1) Potri.002G062700 [exp] 641 / 0 AT1G22760 638 / 0.0 poly(A) binding protein 3 (.1) Potri.001G191500 [exp] 335 / 9e-107 AT3G16380 370 / 5e-122 poly(A) binding protein 6 (.1) Potri.007G028300 [exp] 126 / 2e-31 AT2G18510 453 / 4e-160 embryo defective 2444, RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.002G128100 [exp] 120 / 5e-29 AT1G47490 404 / 6e-139 RNA-binding protein 47C (.1.2) Potri.014G034600 [exp] 116 / 1e-27 AT1G47490 439 / 2e-152 RNA-binding protein 47C (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) CL0221 [flax] [poplar] PF00658 [flax] [poplar] PABP Poly-adenylate binding protein, unique domain
Representative CDS sequence Show only first row Show all	>Lus10010370 pacid=23174862 polypeptide=Lus10010370 locus=Lus10010370.g ID=Lus10010370.BGIv1.0 annot-version=v1.0 ATGGCACAGGTTCAGGCTCAGCATCAACAGTCGGCGGCTACAGTTGGGGCTACGTCGATGCCTGCGCAGAACGGAGTGGCTGTCGCGGCTGGACCGATCC CATTCGGTGCGACCTCCCTCTATGTGGGTGATCTTGATCTGAACGTGACGGAGGCCCAGCTTTTTGATCTGTTTGGCCAAGTCGGTCAGTTGGTCTCCGT TCGGATCTGCAAGGACCAGGCTACACGACGGTCCCTCGGCTATGGTTATGTTAACTATAACAATGGCCAAGAAGCTGGAAGGGCACTGGAATTGCTGAAC TTCACTCCTCTGAACAACAGGCCTATTAGGATCATGTATTCTCATAGGGATCCTAGTGTTCGTAAGAGTGGTGCAGGAAATATCTATATCAAGAACCTTG ACAAGGCCATTGATCACAAAGCATTACATGATACCTTTTCTAGCTTTGGCACCATTCTTTCTTGCAAAGTGGCTACTGATGCTTCTGGACAGTCCAAGGG CTACGGTTTTGTGCAGTTTGACACTGATGAAGCTGCTAAAAATGCTATTGACAAGTTAAACGGCATGCTTATCAATGATAAGCAAGTTTATGTTGGACAC TTTGTCCGGAAGCAGGAGAGAGACAGTTCCTTAAGTAACACAAGGTTCAATAATGTTTTTGTGAAAAATATTTCTGAATCTTCAACAGATGAGGATTTGA AGGAAGTTTTTGGGGAGTATGGCTCTATTACCAGTGCTGTAGTGATGAGGGATGGAGATGGGAAGTCAAGGTGTTTTGGCTTTGTTAATTTTGAAAATGC AGATGATGCAGCTAAAGCTGTTGAAGCTCTTAATGGCAAGAAACTTGATGACAAAGTGTTGTTTGTGGGGAAGGCTCAGAAAAAATCTGAAAGAGAGCTT GAACTGAGAGGGCGATTTGAGCAAACCATTAAGGAATCTGTAGATAAGTACCAAGGACTTAATTTATACATTAAAAATTTGGATGACACCATATCTGATG AAAAGCTCAAGGAGTTATTCTCTGAATTTGGTACAGTAACATCATTCAAGGTTGTGCGTGATTCTAGTGGAATTAGCAAAGGTTCAGGGTTTGTAGCTTT TGCTATGCCTGAAGAGGCGTCTCGAGCTATTAATGAGATGAATGGAAAGATGGTTGTTAGCAAACCCCTGTATGTTGCTCATGCTCAACGGAAAGAGGAT CGTAGAGCAAGACTTCAGGCTCAGTTTTCTCAAATGAGGCCTGTTGCCATGCCTTCTTCAGTTGGACTCCGCATGCCAATGTTTCCTCCCGGTACACCTG GCCTAGGACAACAGTTTCTTTATGGTCAAGGTCCTCCAGCAATAATTCCAACTCAGGGTGGATTTGGGTACCAGCAGCAGCTAGTTCCTGGGATGAGGCC TGGAGTTGGTCCCGTGCAAAATTACTTTGTACCTGTTGTTCAGCAGCAGGGGCAACAGGGTATGCGCCCTGGTGGCCGTCGTGGAGGACAGCAGTCCCAG CAGCCAGTTCCCATGATGCCACAGCAGATGTTCCCTAGAGGACGTGGATCCCGTTACCCTCAAGGAGGTCGCAACATGTCTGAGGTTCCTATGTCAGGTG CCGGTGGCATGCTCTCTGTTCCATATGACATGGGTGGTATGGCAATGCGTGATGCTGCTGCTGGACAGCCTATGCCCATCACTGCTCTTGCATCTGCCCT TGCAAATTCGTCGCCTGGAGATCAAAGGACGCTGCTAGGTGAAAGTCTTTACCCATTGGTGCAACAGCTGGAACATGAATCTGCAGCCAAGGTTACTGGG ATGCTACTTGAGATGGATCAGACTGAGGTGCTGCATCTACTGGAATCACCGGAAGCATTGAAGGCTAAAGTAGCGGAGGCAATGGAAGTTCTTAGGAATG TGTCTGCTGGTGCTGCTCATCCTGAGGCGAACAATACTGCTGATCAGCTGGCTTCACTGTCCCTGAATGACGGTCTCGCATCCTAA
AA sequence Show only first row Show all	>Lus10010370 pacid=23174862 polypeptide=Lus10010370 locus=Lus10010370.g ID=Lus10010370.BGIv1.0 annot-version=v1.0 MAQVQAQHQQSAATVGATSMPAQNGVAVAAGPIPFGATSLYVGDLDLNVTEAQLFDLFGQVGQLVSVRICKDQATRRSLGYGYVNYNNGQEAGRALELLN FTPLNNRPIRIMYSHRDPSVRKSGAGNIYIKNLDKAIDHKALHDTFSSFGTILSCKVATDASGQSKGYGFVQFDTDEAAKNAIDKLNGMLINDKQVYVGH FVRKQERDSSLSNTRFNNVFVKNISESSTDEDLKEVFGEYGSITSAVVMRDGDGKSRCFGFVNFENADDAAKAVEALNGKKLDDKVLFVGKAQKKSEREL ELRGRFEQTIKESVDKYQGLNLYIKNLDDTISDEKLKELFSEFGTVTSFKVVRDSSGISKGSGFVAFAMPEEASRAINEMNGKMVVSKPLYVAHAQRKED RRARLQAQFSQMRPVAMPSSVGLRMPMFPPGTPGLGQQFLYGQGPPAIIPTQGGFGYQQQLVPGMRPGVGPVQNYFVPVVQQQGQQGMRPGGRRGGQQSQ QPVPMMPQQMFPRGRGSRYPQGGRNMSEVPMSGAGGMLSVPYDMGGMAMRDAAAGQPMPITALASALANSSPGDQRTLLGESLYPLVQQLEHESAAKVTG MLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVSAGAAHPEANNTADQLASLSLNDGLAS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G34110		PABP2, PAB2, AT...	ARABIDOPSIS POLY\(A\) BINDING ...		Lus10010370 [exp]	0	1
AT4G00100		PFL2, ATRPS13A	POINTED FIRST LEAF 2, ribosoma...		Lus10031124 [exp]	4.9	0.9609
AT1G33140		PGY2	PIGGYBACK2, Ribosomal protein ...		Lus10005286 [exp]	5.0	0.9621
AT1G24360			NAD(P)-binding Rossmann-fold s...		Lus10036980 [exp]	7.5	0.9401
AT3G13920		RH4, TIF4A1, EI...	eukaryotic translation initiat...		Lus10017153 [exp]	8.9	0.9451
AT4G24175			unknown protein		Lus10017264 [exp]	9.2	0.9331
AT1G03860		ATPHB2	prohibitin 2 (.1.2.3)		Lus10042515 [exp]	9.3	0.9548
AT1G74050			Ribosomal protein L6 family pr...		Lus10039084 [exp]	11.5	0.9547
AT3G17465		RPL3P	ribosomal protein L3 plastid (...		Lus10017709 [exp]	12.0	0.9478
AT5G10920			L-Aspartase-like family protei...		Lus10002606 [exp]	12.4	0.9484
AT2G40770			zinc ion binding;DNA binding;h...		Lus10012867 [exp]	13.4	0.9401

Compare expression of checked genes

Lus10010370 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.