Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G42940 264 / 1e-78 RING/U-box superfamily protein (.1) AT1G45180 247 / 8e-73 RING/U-box superfamily protein (.1) AT4G34040 237 / 9e-69 RING/U-box superfamily protein (.1) AT2G15530 224 / 1e-63 RING/U-box superfamily protein (.1.2.3.4) AT5G24870 155 / 3e-40 RING/U-box superfamily protein (.1.2) AT4G31450 147 / 1e-37 RING/U-box superfamily protein (.1) AT1G53190 146 / 1e-37 RING/U-box superfamily protein (.1.2) AT5G10650 141 / 1e-35 RING/U-box superfamily protein (.1.2) AT3G15070 130 / 3e-32 RING/U-box superfamily protein (.1.2) AT1G73760 122 / 3e-30 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010036 [exp] 927 / 0 AT5G42940 244 / 2e-71 RING/U-box superfamily protein (.1) Lus10024810 [exp] 766 / 0 AT5G42940 316 / 4e-98 RING/U-box superfamily protein (.1) Lus10018725 [exp] 508 / 1e-174 AT5G42940 170 / 1e-45 RING/U-box superfamily protein (.1) Lus10040389 [exp] 146 / 4e-37 AT2G37150 191 / 1e-53 RING/U-box superfamily protein (.1.2.3) Lus10021722 [exp] 108 / 1e-25 AT1G17970 159 / 1e-45 RING/U-box superfamily protein (.1) Lus10034644 [exp] 107 / 1e-25 AT1G17970 139 / 3e-39 RING/U-box superfamily protein (.1) Lus10007967 [exp] 102 / 4e-24 AT1G73760 188 / 8e-58 RING/U-box superfamily protein (.1) Lus10013497 [exp] 101 / 8e-24 AT1G73760 199 / 1e-62 RING/U-box superfamily protein (.1) Lus10026941 [exp] 102 / 2e-22 AT5G24870 257 / 2e-79 RING/U-box superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G124300 [exp] 709 / 0 AT5G42940 377 / 3e-121 RING/U-box superfamily protein (.1) Potri.009G100100 [exp] 345 / 8e-109 AT4G34040 392 / 5e-127 RING/U-box superfamily protein (.1) Potri.001G304900 [exp] 259 / 2e-76 AT4G34040 370 / 4e-118 RING/U-box superfamily protein (.1) Potri.007G045500 [exp] 166 / 2e-43 AT4G34040 163 / 1e-42 RING/U-box superfamily protein (.1) Potri.005G139900 [exp] 159 / 4e-41 AT4G34040 160 / 1e-41 RING/U-box superfamily protein (.1) Potri.018G005600 [exp] 142 / 1e-35 AT5G24870 284 / 6e-89 RING/U-box superfamily protein (.1.2) Potri.010G220700 [exp] 140 / 3e-35 AT2G37150 180 / 6e-50 RING/U-box superfamily protein (.1.2.3) Potri.006G274700 [exp] 140 / 4e-35 AT5G24870 263 / 4e-81 RING/U-box superfamily protein (.1.2) Potri.001G373700 [exp] 139 / 7e-35 AT1G53190 354 / 1e-116 RING/U-box superfamily protein (.1.2) Potri.011G097100 [exp] 137 / 4e-34 AT1G53190 372 / 2e-123 RING/U-box superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10010372 pacid=23174873 polypeptide=Lus10010372 locus=Lus10010372.g ID=Lus10010372.BGIv1.0 annot-version=v1.0 ATGCAAGGGCAAAGGGGTATACTGGGCTCTTTGCCAGAGACTTTGGACTTTGAACATGGATCACCATCGGCTACCCCTATCATGGACCAGCAACATCGCT GGAACAACCTGAGAAATCCTGCAGATGAGCGATTGTCAAACTTCATGCTGTCTCCGGTTCACATGAATGCATATGCAACTCCCATTGATCATGAACGCCA GAACTTGAGTCGGTGGAGCCTAGGTGAACCAAGTTCCAGTACCGGAAGAAGCGAAATAAGCCGGGATAAGCAGAAGATGGAATATGGGTCATCATCTTCA GGAAACATGTCAACTGATGGTAGTTCAAGGTTAGAAGGAAGGTGTAATGAACCAACACATGTTCTTTCCTTGAATACTGCCAATGTCAATGACCAGTTTA TGCAGAGCTCCAATGCCAATGGATTTCCCCATAATCTGAACTTGAATGCTGGATTGGCGGGCCAAGGCGTGGATGGATGTCCAGCGATGGGAGGCCAAAC TCTATACAAGCCTGGTGGAGCTGAACATGGGGTTGCTGCACCTGTTAGTGGTCCTGAGGATTTCCTTCTCCGTTCTGGAAGTGGTGGATACTTGGTGGAA GATGATGGTAGACCCGGTTTTTCATTGGATGGGCGTCGTCAATCGTGCAAAAGGAAAGCTGTGGAAGGACAAGGGCAGTCGTCTATGGCTGCAAATTCTA GTTTGTTTCAGCATCCAGAGGGTAGTGCATGGCCAGTTGTTTCAACCCGTGACTTTCACAGCAGTTTGAGTATGTCAGCTGCGCCAGTGCAGGTGAATCC CAGACATGGATTAGGCGTGAGAGGACTAGGTACTGAAGGTATTGGAGGGCCGATGGCACCTAGAAGCTCTCAAAGAAATTTCCGTTTAAGGATGAATCCT TCACATCAAGAATCTGTCCCCTCTTCATTAGTTTCTTCCGGGAATGTAGTGAGACATCACAATTTGCAAACTTCCCATCACTCATCAAGACCTATTACAG TTGATCATTCCTTGGAGTTTAGGTCATCAGCTATTGCAGAGGCTGTAATTCCTCAAGTTCAGGCAGCTGCTGTCCCTGGTCTAGTTTTACCACAAAATGC TGCTCAATTTAGGTGGAACGATAGCTCTAGCTCAAGACCTGGTAGCTCATCTGGTCCTATGGACTTGAGTGATAGAGAGGGAGGAGGCTCAAGAAGCAGT GCTAGACATATATGGGAGCATCCTAGCAGTGCTTCTTCTGCATCTCGAAATGTCTCAGCTTTAGGCGTTCATTTGTCAGCTCCGACTTGGGTTCCTCATC AAAACCCTTCTAGAAACTCAAGGAGACTGGCAGAGTATGTTCGCCGATCATTGTTTTCTTCTGCTCCTGGCGATACTGGAACTCAGAGCAGTAATCATCC TTCTGCCGAAGAGATGGTTTTGCCGTCTGGGACTAGTAACCAGGGGCATCGATCACATCCGAGATCAGCTCCTTGGATGGAGAGACAGGGCAATGGGGTA CTCAGAATTCCTTACCCCTTACGGACTCTTGGTGCCACCGGTGAAGGTCGAAGCAGGCTTGTTTCTGAGCAGATACGCAATGTCTTGGATCTCATGCGTA GGGGCGAGGGTTTGCGACTTGAGGATGTGATGATCCTTGATCAATCGGTACTTTTTGGCATGGCCGATTTCCATGATAGGCACAGGGACATGCGACTTGA TGTTGACAACATGTCATATGAGGAATTGCTTGCTTTGGAAGAAACCATCGGTACTGTCAATACCGGATTGAGCGAAGAAACCATATTAGATAGGCTCAAA CAACGCAAATATTGTGCTTCAGTTAGAACAACCGAGGTGGAGACAGAGCCATGCTGCGTTTGCCAGGAAGAGTACAATAACGGGGAGGACATCGGAACCC TTGATTGCGGCCACGATTTCCACACGGGTTGTGTGAAGCAATGGCTGATGCTGAAGAATTGGTGCCCCATATGTAAAACGACAGCGCTGGCGACGTGA
AA sequence Show only first row Show all	>Lus10010372 pacid=23174873 polypeptide=Lus10010372 locus=Lus10010372.g ID=Lus10010372.BGIv1.0 annot-version=v1.0 MQGQRGILGSLPETLDFEHGSPSATPIMDQQHRWNNLRNPADERLSNFMLSPVHMNAYATPIDHERQNLSRWSLGEPSSSTGRSEISRDKQKMEYGSSSS GNMSTDGSSRLEGRCNEPTHVLSLNTANVNDQFMQSSNANGFPHNLNLNAGLAGQGVDGCPAMGGQTLYKPGGAEHGVAAPVSGPEDFLLRSGSGGYLVE DDGRPGFSLDGRRQSCKRKAVEGQGQSSMAANSSLFQHPEGSAWPVVSTRDFHSSLSMSAAPVQVNPRHGLGVRGLGTEGIGGPMAPRSSQRNFRLRMNP SHQESVPSSLVSSGNVVRHHNLQTSHHSSRPITVDHSLEFRSSAIAEAVIPQVQAAAVPGLVLPQNAAQFRWNDSSSSRPGSSSGPMDLSDREGGGSRSS ARHIWEHPSSASSASRNVSALGVHLSAPTWVPHQNPSRNSRRLAEYVRRSLFSSAPGDTGTQSSNHPSAEEMVLPSGTSNQGHRSHPRSAPWMERQGNGV LRIPYPLRTLGATGEGRSRLVSEQIRNVLDLMRRGEGLRLEDVMILDQSVLFGMADFHDRHRDMRLDVDNMSYEELLALEETIGTVNTGLSEETILDRLK QRKYCASVRTTEVETEPCCVCQEEYNNGEDIGTLDCGHDFHTGCVKQWLMLKNWCPICKTTALAT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G42940			RING/U-box superfamily protein...		Lus10010372 [exp]	0	1
AT3G01090		AKIN10, SnRK1.1	SNF1-RELATED PROTEIN KINASE 1....		Lus10036582 [exp]	1.0	0.8280
AT3G09320			DHHC-type zinc finger family p...		Lus10024377 [exp]	3.2	0.7896
AT3G62130		LCD	L-cysteine desulfhydrase, Pyri...		Lus10009974 [exp]	4.5	0.7545
AT1G13940			Plant protein of unknown funct...		Lus10026640 [exp]	4.9	0.7828
AT3G17900			unknown protein		Lus10036712 [exp]	5.8	0.8260
AT3G62130		LCD	L-cysteine desulfhydrase, Pyri...		Lus10038033 [exp]	6.3	0.7712
AT3G48195			Phox (PX) domain-containing pr...		Lus10042108 [exp]	7.3	0.8182
AT1G72390			unknown protein		Lus10013169 [exp]	15.2	0.8002
AT1G60670			Protein of unknown function (D...		Lus10030566 [exp]	16.3	0.7510
AT3G23980		KOS1, BLI	KOLD SENSITIV 1, BLISTER (.1)		Lus10023694 [exp]	18.2	0.7678

Compare expression of checked genes

Lus10010372 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.