Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G28740 375 / 3e-126 CYP81D11, CYP81D1 cytochrome P450, family 81, subfamily D, polypeptide 11, Cytochrome P450 superfamily protein (.1) AT4G37370 375 / 3e-126 CYP81D8 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) AT4G37360 370 / 2e-124 CYP81D2 "cytochrome P450, family 81, subfamily D, polypeptide 2", cytochrome P450, family 81, subfamily D, polypeptide 2 (.1) AT2G23220 369 / 2e-123 CYP81D6 "cytochrome P450, family 81, subfamily D, polypeptide 6", cytochrome P450, family 81, subfamily D, polypeptide 6 (.1) AT4G37340 366 / 9e-123 CYP81D3 "cytochrome P450, family 81, subfamily D, polypeptide 3", cytochrome P450, family 81, subfamily D, polypeptide 3 (.1) AT4G37310 366 / 2e-122 CYP81H1 "cytochrome P450, family 81, subfamily H, polypeptide 1", cytochrome P450, family 81, subfamily H, polypeptide 1 (.1) AT5G67310 358 / 1e-119 CYP81G1 "cytochrome P450, family 81, subfamily G, polypeptide 1", cytochrome P450, family 81, subfamily G, polypeptide 1 (.1) AT5G36220 357 / 3e-119 CYP91A1, CYP81D1 CYTOCHROME P450 91A1, cytochrome P450, family 81, subfamily D, polypeptide 1, cytochrome p450 81d1 (.1) AT4G37330 356 / 5e-119 CYP81D4 "cytochrome P450, family 81, subfamily D, polypeptide 4", cytochrome P450, family 81, subfamily D, polypeptide 4 (.1) AT2G23190 356 / 4e-118 CYP81D7 "cytochrome P450, family 81, subfamily D, polypeptide 7", cytochrome P450, family 81, subfamily D, polypeptide 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018717 [exp] 512 / 1e-179 AT4G37370 533 / 0.0 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) Lus10024816 [exp] 457 / 7e-158 AT4G37370 506 / 2e-176 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) Lus10020437 [exp] 417 / 1e-142 AT4G37370 630 / 0.0 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) Lus10024819 [exp] 368 / 4e-123 AT4G37320 493 / 3e-171 "cytochrome P450, family 81, subfamily D, polypeptide 5", cytochrome P450, family 81, subfamily D, polypeptide 5 (.1) Lus10024818 [exp] 362 / 7e-121 AT4G37320 480 / 2e-166 "cytochrome P450, family 81, subfamily D, polypeptide 5", cytochrome P450, family 81, subfamily D, polypeptide 5 (.1) Lus10011958 [exp] 361 / 1e-120 AT5G36220 548 / 0.0 CYTOCHROME P450 91A1, cytochrome P450, family 81, subfamily D, polypeptide 1, cytochrome p450 81d1 (.1) Lus10027614 [exp] 353 / 2e-118 AT4G37370 496 / 6e-174 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) Lus10041643 [exp] 352 / 8e-117 AT4G37320 433 / 6e-148 "cytochrome P450, family 81, subfamily D, polypeptide 5", cytochrome P450, family 81, subfamily D, polypeptide 5 (.1) Lus10024078 [exp] 350 / 8e-116 AT4G37320 437 / 3e-149 "cytochrome P450, family 81, subfamily D, polypeptide 5", cytochrome P450, family 81, subfamily D, polypeptide 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G121200 [exp] 411 / 2e-140 AT4G37340 465 / 1e-160 "cytochrome P450, family 81, subfamily D, polypeptide 3", cytochrome P450, family 81, subfamily D, polypeptide 3 (.1) Potri.002G121400 [exp] 409 / 1e-139 AT4G37370 470 / 1e-162 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) Potri.003G007000 [exp] 390 / 7e-132 AT4G37370 525 / 0.0 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) Potri.003G007900 [exp] 388 / 4e-131 AT4G37370 524 / 0.0 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) Potri.003G008200 [exp] 387 / 5e-131 AT4G37370 531 / 0.0 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) Potri.014G020500 [exp] 386 / 1e-130 AT4G37370 462 / 2e-159 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) Potri.014G020600 [exp] 385 / 4e-130 AT4G37370 479 / 4e-166 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) Potri.003G006000 [exp] 385 / 4e-130 AT4G37370 526 / 0.0 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) Potri.014G021800 [exp] 383 / 6e-129 AT4G37360 458 / 1e-157 "cytochrome P450, family 81, subfamily D, polypeptide 2", cytochrome P450, family 81, subfamily D, polypeptide 2 (.1) Potri.014G021700 [exp] 375 / 4e-126 AT5G10600 436 / 7e-149 "cytochrome P450, family 81, subfamily K, polypeptide 2", cytochrome P450, family 81, subfamily K, polypeptide 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10010373 pacid=23174864 polypeptide=Lus10010373 locus=Lus10010373.g ID=Lus10010373.BGIv1.0 annot-version=v1.0 ATGGGTGTCCGAAATGCACTTGTCGTCTCTTCCCCATCTATCGTTGAGGAATGCTTCACTCGAAACGATGCTGTATTTGCGAACCGCCCGGATCTCTCCC TCGGTAAAATTCTTCACTACAACTACTCCACCATCGCTTCTGCACCTTCCGGCCCGCTCTGGCGCACCCTTCGTCGATTCATCACCCTTGAGCACCTTTC TACCTCCGCAGTCAACTCGTCCTACCATATTCGCCAACACGAAGTCAATCTGTTGTTGCGGGACCTATTTGATGTTTCGGCTGGAGGATCGGATGTCTGT AAGGTAAACATCAAGTCAAGGATTTCGGCTCTGACCATGAATATCATAATGAAAATGGCATGCGGGAAAAGATACTATGGGGTGGGAGGGAAGCTAATCC AGCAAGGTGGTAACGATTTTGATTTCCAAGAAGTTGTAAATGAAGTTTTATATGTGTTAAGCAACGCATCATTGAAGGCAGGAGATTTCTTGCCGATGCT AAGGTGGTTTGATTTGGGTGGAAACGAGAAAAGGATAAGAACAGCACATGCCAAGTCCGAGGCTTTTTTGCAAGCGTTGGTTAACCAACATCGAAATATC AAGCAAATTCACGAGAACCTAAAAGAGGCAAGTTCGACCAACGACTACAAGACCATGATTGATGTAATGCTTTCTTTGCAAGAATCCGAACCCGAAACTT ATTACAATGATGATGTCATCAAAGGCATGATCTTGATAATGATAATAGTTGGCACGGCAACATTTGCGATGATGATGGAATGGGCAATGTTCTTGTTACT AAACCACCCAGAGGTCCTTAACAAGGCAAGAGCTGAGATAGACAGAGTGGTCGGAAACAACCGCTTAATGGACGAAAGTGATTACCCTAAGCTTCCATAT CTCCAACACATAATCAAGGAGACGCTTTGCCTTTACCCGGTAACACCATTGCTAGTCCCACATCATTCGTCAGAGGATTGTACTGTTTCTGGATACTTCA TTCCCAAGGGTACTATGTTAATGGTAAATGCATATGCTATCCAGAGAGATACCGTGTTGTGGGAAGACCCGACCAGTTTTCGGCCTGAGAGACATGATGA AAAATTGGTGAGCAATGATGTTGTTGAGTACGAGGGTTATAGGTTTTTGCCTTTTGGTATTGGAAGAAGAGCATGCCCTGCATCTGGGTTGGCGAATAGG GTCATGGGGTTGGTTTTGGGTTCATTAATTCAGTGCTTTGAGTGGAGAAGGATTAGCTATGAATTAGTAGACATGTCTGAAGGCCAAGGACTGACTATGC CCAAAGCCAGCCTTTGGAAGGCGTTTGAAAGCCTCGAACGTGTATGA
AA sequence Show only first row Show all	>Lus10010373 pacid=23174864 polypeptide=Lus10010373 locus=Lus10010373.g ID=Lus10010373.BGIv1.0 annot-version=v1.0 MGVRNALVVSSPSIVEECFTRNDAVFANRPDLSLGKILHYNYSTIASAPSGPLWRTLRRFITLEHLSTSAVNSSYHIRQHEVNLLLRDLFDVSAGGSDVC KVNIKSRISALTMNIIMKMACGKRYYGVGGKLIQQGGNDFDFQEVVNEVLYVLSNASLKAGDFLPMLRWFDLGGNEKRIRTAHAKSEAFLQALVNQHRNI KQIHENLKEASSTNDYKTMIDVMLSLQESEPETYYNDDVIKGMILIMIIVGTATFAMMMEWAMFLLLNHPEVLNKARAEIDRVVGNNRLMDESDYPKLPY LQHIIKETLCLYPVTPLLVPHHSSEDCTVSGYFIPKGTMLMVNAYAIQRDTVLWEDPTSFRPERHDEKLVSNDVVEYEGYRFLPFGIGRRACPASGLANR VMGLVLGSLIQCFEWRRISYELVDMSEGQGLTMPKASLWKAFESLERV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G37370		CYP81D8	"cytochrome P450, family 81, s...		Lus10010373 [exp]	0	1
AT2G39210			Major facilitator superfamily ...		Lus10021512 [exp]	1.0	0.9938
AT5G63160		BT1	BTB and TAZ domain protein 1 (...		Lus10033038 [exp]	2.4	0.9752
AT5G26594		ARR24	response regulator 24 (.1)		Lus10005407 [exp]	2.8	0.9567
					Lus10017557 [exp]	3.2	0.9566
AT3G48360		ATBT2, BT2	BTB and TAZ domain protein 2 (...		Lus10013670 [exp]	4.5	0.9525
AT2G03220		ATFUT1, ATFT1, ...	MURUS 2, ARABIDOPSIS THALIANA ...		Lus10012571 [exp]	5.5	0.9797
AT3G50940			P-loop containing nucleoside t...		Lus10015802 [exp]	7.2	0.9370
					Lus10013898 [exp]	8.1	0.9115
					Lus10027664 [exp]	8.3	0.9414
AT1G02660			alpha/beta-Hydrolases superfam...		Lus10010031 [exp]	10.4	0.9001

Compare expression of checked genes

Lus10010373 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.