Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G27670 150 / 4e-40 RST1 RESURRECTION1, ARM repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022263 [exp] 406 / 1e-129 AT3G27670 1258 / 0.0 RESURRECTION1, ARM repeat superfamily protein (.1) Lus10010376 [exp] 378 / 4e-125 AT3G27670 687 / 0.0 RESURRECTION1, ARM repeat superfamily protein (.1) Lus10013075 [exp] 243 / 4e-79 AT3G27670 229 / 3e-68 RESURRECTION1, ARM repeat superfamily protein (.1) Lus10013076 [exp] 217 / 6e-65 AT3G27670 557 / 3e-179 RESURRECTION1, ARM repeat superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G346000 [exp] 259 / 8e-78 AT3G27670 1757 / 0.0 RESURRECTION1, ARM repeat superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10010374 pacid=23174858 polypeptide=Lus10010374 locus=Lus10010374.g ID=Lus10010374.BGIv1.0 annot-version=v1.0 ATGTCGTTTACACCTAAAGAACTGACCAAGCGAGCGCCGCATAATGTAATAGTGGATGTCCATGCAAAGTACGAGACTGAACTGGACGCTAAAGCATCAT CTGTTGGAGTAGACAAAAATTGTAAAGCTGCAAATGATATTTTGAAGAGTGTTATGCAATTAGCTGAAGAATCTTTGCCGAGAGCTGCTGAGAACATGAC ACTTGCTATTGGTACACTTTGTGCGGTACTGTGCACGAGCAGAAATACTCTTGTCAAAGGAGCTTGTGGTGTTAGCTTGGGCTTTTCATGTGAAGATCTC TTGACCAGGGGTAATAACTTTGTTAACAAAGAGAAAGAGCACTATAGACAGCAGGAGGTCAACTTAATTTCCAGAATTATTAGTGCGTTACTTCTTATGA CAAGCCAGCTCAGTGAAGCTTCAAATGATTTTATGGAAGGCTTGTCTGCATATCCCCCACTTTGCAAGAGCAATTCCAAACTAAATGTGAGTTCTAAGTT TTTGGTCAAAGAGTCGGATGAGCTCATGGAGGATGCATGGGGTGTTGCTGGTCTTGTCCTTGGCTTGGGGTTCTGTGTTGGTGCAATGTACTGGGTTGGG CATATGATACTGTACAAAAGTTTCCTTAAGGAAGACCAGGAGAAGGTCTTATCAGTAGGATCCAGTCTTGTTTTTCCTAATATTGTAGGTTTCTGCCTGA AAGTAGAAATGATGAATGGTGTTGAGCTAGATCATTTACTTCATGGATGTGAAAAGCTTATTAAGGAACTCTTAGGCATGAAGAAATCTGGTATTTTCCA TCAAAGCTTATTGGCAGCCTCGTGTATAGGAGAAGGAAGCCTTCTTGCCTGCATTCTGAAGGAAGGCGTACATCCCATTGACACAGAATATGTGAAACGC CTGCTTGAATTATTTAGAAGTTCTCATACTACTACCTATCCATCTATGATTAATCTTGGTGGGATGATTGGAATAGTTAGTGCCATGTGA
AA sequence Show only first row Show all	>Lus10010374 pacid=23174858 polypeptide=Lus10010374 locus=Lus10010374.g ID=Lus10010374.BGIv1.0 annot-version=v1.0 MSFTPKELTKRAPHNVIVDVHAKYETELDAKASSVGVDKNCKAANDILKSVMQLAEESLPRAAENMTLAIGTLCAVLCTSRNTLVKGACGVSLGFSCEDL LTRGNNFVNKEKEHYRQQEVNLISRIISALLLMTSQLSEASNDFMEGLSAYPPLCKSNSKLNVSSKFLVKESDELMEDAWGVAGLVLGLGFCVGAMYWVG HMILYKSFLKEDQEKVLSVGSSLVFPNIVGFCLKVEMMNGVELDHLLHGCEKLIKELLGMKKSGIFHQSLLAASCIGEGSLLACILKEGVHPIDTEYVKR LLELFRSSHTTTYPSMINLGGMIGIVSAM

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G27670		RST1	RESURRECTION1, ARM repeat supe...		Lus10010374 [exp]	0	1
AT1G61780			postsynaptic protein-related (...		Lus10002066 [exp]	2.4	0.9045
AT5G22620			phosphoglycerate/bisphosphogly...		Lus10009404 [exp]	3.0	0.8912
					Lus10018566 [exp]	3.2	0.8912
AT1G16670			Protein kinase superfamily pro...		Lus10042851 [exp]	4.4	0.9248
AT5G37290			ARM repeat superfamily protein...		Lus10008435 [exp]	4.7	0.9150
AT1G07745		SSN1, ATRAD51D,...	SUPPRESOR OF SNI1, homolog of ...		Lus10025465 [exp]	6.0	0.8890
AT5G67380		ATCKA1, CKA1	casein kinase alpha 1 (.1.2)		Lus10032849 [exp]	6.3	0.9014
AT1G04610		YUC3	YUCCA 3 (.1)		Lus10032609 [exp]	6.5	0.8989
AT3G50440		ATMES10	ARABIDOPSIS THALIANA METHYL ES...		Lus10022467 [exp]	7.1	0.8839
AT1G48175		TAD1, EMB2191	tRNA adenosine deaminase 1, em...		Lus10009163 [exp]	8.8	0.8851

Compare expression of checked genes

Lus10010374 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.