Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G27670 260 / 4e-76 RST1 RESURRECTION1, ARM repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022263 [exp] 522 / 5e-170 AT3G27670 1258 / 0.0 RESURRECTION1, ARM repeat superfamily protein (.1) Lus10013074 [exp] 264 / 2e-83 AT3G27670 226 / 6e-65 RESURRECTION1, ARM repeat superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G346000 [exp] 337 / 1e-102 AT3G27670 1757 / 0.0 RESURRECTION1, ARM repeat superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF12530 [flax] [poplar] DUF3730 Protein of unknown function (DUF3730)
Representative CDS sequence Show only first row Show all	>Lus10010375 pacid=23174861 polypeptide=Lus10010375 locus=Lus10010375.g ID=Lus10010375.BGIv1.0 annot-version=v1.0 ATGGACGCTTATGCTCCACTTCTGGAGAAAACGAAGGTTCCGCAGACGTCTTTACAGAAACTCGCTGTGGTTTCTATCTTCTCGAAGCTTCGCACAGCTT CTAAGTACCTTGACGCTGACTCCGAACCCGGCAGAGAAGCAATCTCTAACTGCCTACTGTCCCCATCCCCTGCAGTTGTCGACCAGGCGGATCGTGAGCT CTGCCGTCTCGTTTCCGATTCCAAATTGGATCTCTCTCGTGGTATTGTTGAGCTCCAGTCAGCTCTTGAAGGAACAGAGGACAAGTTCGTTACCTTGTTT GTTAAAGGCCTTGGGTTTATAGTTAGGCTGGGCTTTGACAGGAGCCATGGCTTCTGCCGGTTTACTTCTTCTGAAAATCATCCTTTTGTTAAGGTTGGTG AATTGATTATTTTGTTCCTGATATCTTTTGATTGTTCAGTTCGTGCATGTTCAAGGCAAACCAAGCCAGTTGTTGAATTGATTATGGTTGATGCTTGTGA ATTCTTGAGACCCGTGCTAAACTTTTCAGTACTGAGTTTACCATTTTCAGATTCACTGTCATCATTGTTCGCTAGGCCGTTAATATCATCAATGGCATCT TGCTGCTGCTCATTCCCAGATGATGGAATTCCTATTCTCAGGCTATTGGTGGGCGGCCTAAAATTCTTGCAACGCGAGACCTCGGATCCGTCAGTTGCTG AGGCTCAACAGCTTGGATTGGAACTGACAGAAACCATTCTTTCATTGTTGGATCGTTTTCATGAGTGTCATGGCAGCAGTGACCGAATTCTTGAACTGTT GAAGCACCTATTTGTTGCTCAGAAGGATCTTGGATTGGGATACGTGCCAGAATTGTCAGCGACACTCCTCTCTCTCTCTCTCTCTACTATCTTAGCTCAG TCTGAGCTTGAACATGAACAGCTTTCCCTACTGAAACTCCTCATCTACATCCTTAGGTGGAAAATGGAAAATGCGAATTCAGTATCAAAACCTGCTCTAA GTGAAGAACTCCTTTTCATGTTTCCTGTGCTTAACCTTATGTCATCCTCTTCCAAATCGGTTAGTAAGGCTGTAGCAACTGATTTAATCAGCATGGTTGA GAATTGTCTAGTTCAATTATTGAAAGCATTAAATCCTGAGCTGTGTGTTGGTTTGAAATTTCCTCATAAGAGCACAGTGGGGACCATCGTGTATAGGCTT TTGCAACATTTGTGGGTACAGGTAAAAATTGTCAACTCTACTTCGTGCTATATGGATCTTATTTCTTGTGCCAAAACTCATGATGAAGAGAAACCAACAC TGGGATTTCGGGGCTGGGCTTCTAAAGTTAGAGAGTACTGTTTGTGGATTACTGACAGGCGAAAATCCTCTGTGCCCCTATCTCAGTTTGAAGAAGTTTT CTTGAAAGGCAAGTCATGTCAAACTTTTTTCATTCATTTAGTTTAA
AA sequence Show only first row Show all	>Lus10010375 pacid=23174861 polypeptide=Lus10010375 locus=Lus10010375.g ID=Lus10010375.BGIv1.0 annot-version=v1.0 MDAYAPLLEKTKVPQTSLQKLAVVSIFSKLRTASKYLDADSEPGREAISNCLLSPSPAVVDQADRELCRLVSDSKLDLSRGIVELQSALEGTEDKFVTLF VKGLGFIVRLGFDRSHGFCRFTSSENHPFVKVGELIILFLISFDCSVRACSRQTKPVVELIMVDACEFLRPVLNFSVLSLPFSDSLSSLFARPLISSMAS CCCSFPDDGIPILRLLVGGLKFLQRETSDPSVAEAQQLGLELTETILSLLDRFHECHGSSDRILELLKHLFVAQKDLGLGYVPELSATLLSLSLSTILAQ SELEHEQLSLLKLLIYILRWKMENANSVSKPALSEELLFMFPVLNLMSSSSKSVSKAVATDLISMVENCLVQLLKALNPELCVGLKFPHKSTVGTIVYRL LQHLWVQVKIVNSTSCYMDLISCAKTHDEEKPTLGFRGWASKVREYCLWITDRRKSSVPLSQFEEVFLKGKSCQTFFIHLV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G27670		RST1	RESURRECTION1, ARM repeat supe...		Lus10010375 [exp]	0	1
AT3G53090		UPL7	ubiquitin-protein ligase 7 (.1...		Lus10008636 [exp]	2.6	0.9572
AT3G62300		ATDUF7	DOMAIN OF UNKNOWN FUNCTION 724...		Lus10000430 [exp]	6.2	0.9348
AT3G54460			SNF2 domain-containing protein...		Lus10024159 [exp]	7.3	0.9436
					Lus10005713 [exp]	7.8	0.9051
AT1G79540			Pentatricopeptide repeat (PPR)...		Lus10020852 [exp]	8.5	0.9315
AT1G24706		EMB2793, AtTHO2	EMBRYO DEFECTIVE 2793, THO2 (....		Lus10035106 [exp]	8.9	0.9504
					Lus10005027 [exp]	8.9	0.8956
AT1G03000		PEX6	peroxin 6 (.1)		Lus10040918 [exp]	9.1	0.9141
AT3G53090		UPL7	ubiquitin-protein ligase 7 (.1...		Lus10035589 [exp]	9.8	0.9412
AT1G02080			transcription regulators (.1.2...		Lus10028176 [exp]	11.7	0.9404

Compare expression of checked genes

Lus10010375 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.