Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G27670 317 / 2e-91 RST1 RESURRECTION1, ARM repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022263 [exp] 1306 / 0 AT3G27670 1258 / 0.0 RESURRECTION1, ARM repeat superfamily protein (.1) Lus10013076 [exp] 867 / 0 AT3G27670 557 / 3e-179 RESURRECTION1, ARM repeat superfamily protein (.1) Lus10013075 [exp] 446 / 1e-151 AT3G27670 229 / 3e-68 RESURRECTION1, ARM repeat superfamily protein (.1) Lus10010374 [exp] 376 / 9e-124 AT3G27670 183 / 2e-51 RESURRECTION1, ARM repeat superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G346000 [exp] 436 / 1e-132 AT3G27670 1757 / 0.0 RESURRECTION1, ARM repeat superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10010376 pacid=23174867 polypeptide=Lus10010376 locus=Lus10010376.g ID=Lus10010376.BGIv1.0 annot-version=v1.0 ATGGATGTTCATCCAAAGTACGAGACTGAACTGGGTGACATTTCTGCATCTCTTCATCTCTCAAGAAACATTTTTGTTGCACTTCTTTCCCTTGAATCAT GGAAATCCTTCATGTATCATTGGATGAATGCCAATGTTTCCTCTCTTGACGCTAAAGCATCATCTGTTGGAGTAGACAAAAATTGTAAAGCTGCAAATGA TATTTTGAAGAGTGTTATGCAATTAACTGAAGAATCTTTGCCGAGAGCTGCTGAGCACATGGCACTTGCTATTGGTACACTTTGTGCAGTATTGCCTGCA TCTGCCCATACTATAAAATCAGCTCCATCAAAATTTCTGTTGAGTTGGTTATTGCATCATGAGCATGAACATCGGCAATGGTCAGCTGCAATGTCCCTTG GGCTGATCTCAACTGGCATGCATGTAACTGATCATAAGCAGAAATTTGAAAACATCAACGGACTTCTTGAGGTACTGTGCACGAGTAGAAATACTCTTGT CAAAGGAGCTTGTGGTGTTAGTTTGGGCTTTTCATGTGAAGATCTCTTGACCAGGGGTAATAACTTTGTTAACAAAGAGAAAGAGCACTATAGACAGCAC GAGGTCAACTTAATTTCCAGAATTATTAGTGCGTTACTTCTTATGACAAGCCAGCTCAGTGAAGCTGCAAATGATTTTATGGAAGGCTTGTCTGCATATC CCCCACTTTGCAAGAGCAATTCCAAACTAAATGTGAGTTCTAAGTTTTTGGTCAAAGAGTCGGATGAGCTCATGGAGGATGCATGGGGTGTTGCTGGTCT TGTCCTTGGCTTGGGGTTCTGTGTTGGTGCAATGTACTGGTCTGGGGCATATGATGCTGTACAAAAGGTGAAAGACCTTATTCTTTCTTGGATCCCACAC ATAGATGTTTCACCGTTAAACCCTAGTTTCCTTAAGGAAGACCAGGAGAAGGTCTTATCAGTAGGATCCTGTCTTGTTTTTCCTAATATTGTAGCTTTCT GCCTGAAAGTAGAAATGATGAATGGTGTTGAGCTAGATCATTTACTTCATGGATGTGAAAAGCTTATTAAGGAACTCTTAGGCGTGAAGAAATCTGGTAC TTTCCATCAAAGCTTATTGGCAGCCTCGTGTATAGGAGAAGGAAGCCTTCTTGCCTGCATTCTGAAGGAAGGCGTACATCCCATTGACACAGAATATGAT TCTTCAGGTCTTTTAGGTCCTCTGGTTTTAAGTCCAGCTTCTGAACCAAATGTGACCTCATTGGTGCAAGAAATATTTCTTGTTGCGCAGAACTCAAATG ATCTTATGATGAAACACACTGCAACTTGGGAATTGTCCTTCCTGAGAAATCATTTATGGTTACATGAAGCGAAAAATACTGATTCTACTGGTCAGGTTGA TATTGTCGACTCCAGAATAATTTCTCATAGCTTTCCCGATGACAGTTCAGTGGTGAAGCTATCGATGTGGCTTTTGAATTTGAACTATGCCGAGGCTGGG AATGTAACGTTTGTTACAAATGCAGCCACTGTCCTGAGATGCCTATCGCGAGCTCCACGGCTGCCAGCTGTAGATTGGGGTAGCATCATTAGGCGCTGCA TTAGATATGAGGCTCAAGTTTACAAATCTCTGCCCTCAGATTCAGATATTAATAGGGCAACACTTAGAGAGGAATGCCTGAAATTTGCCATATCTCATGC AAACAAATTTGATCAACTCCTTACTTTTCTTGATGAACTATCTCTACTATCTAATTCTTCATACAACATGTGCAGCCTGGATCAGAAAAGTTTTTTGAGG GTATCATGTTGGAAAGGCATATGTGACTTTTTAGATGAAGCTTCCCTCGACTCTCTGCAGTGCATATCTAGTATAGAATGGTGTATGGAGATTCTGTTTA CTCTGCTGCCTCGGCCAGAATTCGCTGAGAGTAGTGTCGAAGGGGAAGGCCAGTACTCCGGAGTCCTAAAGAAGATTCTAGCAAAAGCAAAGCTTGCCAG AATGAGTTCTTTGCCTTTAACCGAGCTAGGAAAACTGAAAACTTATTCATTAAACTCCAACTCAAATGGTGTTTGGCACGTTCTTGTGGAGATGGTAGCA ACTTTGCAACACGGAGAGGGAAGTGTAAAGAGGCAGTGGCTGATTGATTCGGTGGAAACAAGTTGCGTATCAACCCATCCATCGACGGCACTGAGATTTT TGGGTCTTGTATCTGGTATCTGCTGCAAATACATGCCTCTGATAACCTTTGACATGTTAACGGTTCTAAGTGATCTACCAGTGACTCTGACCGCTCTCCT GAAGGAGCCCAGTTGCGAATCTATTGCCATATCGGTTACTTGCAGTCTATGTGCGTCAACAGAACGAATGTATGAGTGGATTACATCAGGATACAACAGG TCTAGCACTCAGCCTATTGACAAACGTGAGAAGGAAAATGGTGCCTTGTTATTGTGTACAATCCATTACACCTGTGTATGTTTGAAAGAGTACCTGCCGC TAGAGAAGCAGCTTCTGCTTGCGAACATGATTATCAAGAATTAA
AA sequence Show only first row Show all	>Lus10010376 pacid=23174867 polypeptide=Lus10010376 locus=Lus10010376.g ID=Lus10010376.BGIv1.0 annot-version=v1.0 MDVHPKYETELGDISASLHLSRNIFVALLSLESWKSFMYHWMNANVSSLDAKASSVGVDKNCKAANDILKSVMQLTEESLPRAAEHMALAIGTLCAVLPA SAHTIKSAPSKFLLSWLLHHEHEHRQWSAAMSLGLISTGMHVTDHKQKFENINGLLEVLCTSRNTLVKGACGVSLGFSCEDLLTRGNNFVNKEKEHYRQH EVNLISRIISALLLMTSQLSEAANDFMEGLSAYPPLCKSNSKLNVSSKFLVKESDELMEDAWGVAGLVLGLGFCVGAMYWSGAYDAVQKVKDLILSWIPH IDVSPLNPSFLKEDQEKVLSVGSCLVFPNIVAFCLKVEMMNGVELDHLLHGCEKLIKELLGVKKSGTFHQSLLAASCIGEGSLLACILKEGVHPIDTEYD SSGLLGPLVLSPASEPNVTSLVQEIFLVAQNSNDLMMKHTATWELSFLRNHLWLHEAKNTDSTGQVDIVDSRIISHSFPDDSSVVKLSMWLLNLNYAEAG NVTFVTNAATVLRCLSRAPRLPAVDWGSIIRRCIRYEAQVYKSLPSDSDINRATLREECLKFAISHANKFDQLLTFLDELSLLSNSSYNMCSLDQKSFLR VSCWKGICDFLDEASLDSLQCISSIEWCMEILFTLLPRPEFAESSVEGEGQYSGVLKKILAKAKLARMSSLPLTELGKLKTYSLNSNSNGVWHVLVEMVA TLQHGEGSVKRQWLIDSVETSCVSTHPSTALRFLGLVSGICCKYMPLITFDMLTVLSDLPVTLTALLKEPSCESIAISVTCSLCASTERMYEWITSGYNR SSTQPIDKREKENGALLLCTIHYTCVCLKEYLPLEKQLLLANMIIKN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G27670		RST1	RESURRECTION1, ARM repeat supe...		Lus10010376 [exp]	0	1
AT3G44590			60S acidic ribosomal protein f...		Lus10026712 [exp]	11.5	0.7668
AT2G30600			BTB/POZ domain-containing prot...		Lus10016014 [exp]	12.4	0.7471
AT3G27670		RST1	RESURRECTION1, ARM repeat supe...		Lus10010374 [exp]	14.0	0.8030
AT3G07180			GPI transamidase component PIG...		Lus10022778 [exp]	19.9	0.7265
AT1G61780			postsynaptic protein-related (...		Lus10002066 [exp]	27.7	0.7787
AT3G50440		ATMES10	ARABIDOPSIS THALIANA METHYL ES...		Lus10022467 [exp]	29.9	0.7766
AT1G13330		AHP2	Arabidopsis Hop2 homolog (.1)		Lus10035033 [exp]	30.7	0.7357
AT5G43600		ATAAH-2, UAH	ARABIDOPSIS THALIANA ALLANTOAT...		Lus10021221 [exp]	35.8	0.7266
AT5G08450			unknown protein		Lus10004298 [exp]	49.4	0.6951
					Lus10005904 [exp]	51.9	0.7438

Compare expression of checked genes

Lus10010376 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.