Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G67320 397 / 3e-133 HOS15 high expression of osmotically responsive genes 15, WD-40 repeat family protein (.1) AT2G26060 86 / 3e-18 EMB1345 embryo defective 1345, Transducin/WD40 repeat-like superfamily protein (.1.2) AT3G49660 82 / 4e-17 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT5G13480 76 / 2e-14 FY Transducin/WD40 repeat-like superfamily protein (.1.2) AT5G43920 71 / 4e-13 transducin family protein / WD-40 repeat family protein (.1) AT2G41500 71 / 6e-13 EMB2776, LIS LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) AT2G32700 71 / 8e-13 MUM1, LUH MUCILAGE-MODIFIED 1, LEUNIG_homolog (.1.2.3.4.5.6.7) AT1G61210 70 / 1e-12 DWA3 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2) AT5G16750 70 / 2e-12 TOZ TORMOZEMBRYO DEFECTIVE, Transducin family protein / WD-40 repeat family protein (.1) AT5G25150 69 / 4e-12 TAF5 TBP-associated factor 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024972 [exp] 724 / 0 AT5G67320 819 / 0.0 high expression of osmotically responsive genes 15, WD-40 repeat family protein (.1) Lus10039636 [exp] 84 / 2e-17 AT3G49660 502 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10021059 [exp] 85 / 3e-17 AT2G41500 706 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Lus10004167 [exp] 82 / 1e-16 AT2G41500 708 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Lus10003487 [exp] 81 / 1e-16 AT3G49660 489 / 6e-176 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10021365 [exp] 79 / 7e-16 AT2G26060 482 / 2e-172 embryo defective 1345, Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10006916 [exp] 76 / 5e-15 AT4G02730 506 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10014674 [exp] 76 / 6e-15 AT4G02730 508 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10017045 [exp] 74 / 3e-14 AT2G26060 486 / 5e-174 embryo defective 1345, Transducin/WD40 repeat-like superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G050100 [exp] 461 / 9e-159 AT5G67320 645 / 0.0 high expression of osmotically responsive genes 15, WD-40 repeat family protein (.1) Potri.005G144400 [exp] 452 / 3e-155 AT5G67320 671 / 0.0 high expression of osmotically responsive genes 15, WD-40 repeat family protein (.1) Potri.002G212800 [exp] 91 / 7e-20 AT2G26060 530 / 0.0 embryo defective 1345, Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.007G009500 [exp] 89 / 2e-19 AT3G49660 469 / 4e-168 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.005G148500 [exp] 82 / 4e-17 AT3G49660 503 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.001G221000 [exp] 76 / 9e-15 AT2G26060 523 / 0.0 embryo defective 1345, Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.006G045800 [exp] 76 / 2e-14 AT2G41500 614 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Potri.002G051900 [exp] 72 / 7e-14 AT4G02730 524 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Potri.018G020200 [exp] 74 / 8e-14 AT5G25150 984 / 0.0 TBP-associated factor 5 (.1) Potri.001G026800 [exp] 74 / 1e-13 AT5G13480 726 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat CL0561 [flax] [poplar] LisH PF08513 [flax] [poplar] LisH LisH
Representative CDS sequence Show only first row Show all	>Lus10010384 pacid=23146088 polypeptide=Lus10010384 locus=Lus10010384.g ID=Lus10010384.BGIv1.0 annot-version=v1.0 ATGACGTCAATCACTTCCGTCGAACTGAACTACCTCGTTTTCCGGTATCTTCAAGAGTCAGGTTTCACGCATTCTGCATTTGCTTTAGGTTACGAGGCAG GTATTAATAAATGCACTATAGACGGCAATATGGTTCCTCCTGGTTCTCTTATAACATTCGTTCAAAAGGGACTTCAGTACTTGGAGATGGAAGCAAACTT GAGCCATAGTGATGCTGATGTTGAGGAAGACTTTTCATTGCTGCAACCATTGGAACTTATCACAAAAGATGTATGTGAGTTGCGGCAGATGATAAAAGAG AGGAAAAAAAGTTTGCAAAAGGAAAGAGATAAGGAGAAAGAGAAAGAGAAAGAGAAGGACAAAGAGAAGGATAAAGAGAAAGAGAAAGAAAAAGATCGAG AAAGAGACAAGGAGATTGAGAAGGACCATGAAAGAGAACGTGCATGCATAAGAGAGAAGGAAAGACAAGAACGGGAAAAAGAGGCCGGAAAGGACAGAGA AAGGATAGAGACGGAGAAGGAGCGAGAAAAAATACATGGAGACACAACAGAGAGAGGGATGATTCCTGACCTCGAGGAGAAGACTATTGTCAAACATGGT GAAAATGGAACTTCTGGAGGGGTTGAACCAATGGATATTTGTACTACATCAACATCACAGGCTTGTGAAATTAATAGTTCTGATGTGATGATTTTAGAAG GCCATACTTCTGAGGTTTGCGCCTGTGCGTGGAGTCCTACTGGATCAATTCTTGCATCCGGGTCTGGAGATTCCACTGCACGTATATGGACCATTGCAGA GGGTACGTCTAAATCTGGTAATGGTCCGCTAAGTGTATTGGTGCTGAAGCATGTAAAGGGAAAAACTAATGAGAAGAGTAAAGATGTAACTACGCTTGAT TGGAATGGTGAGGGAACGTTACTTGCAACTGGTTCATATGATGGGCAAGCCAGAATATGGAGCACGGACGGTGATCTGAAAAGTACTCTGTCCAAACATA AGGGACCTATTTTTTCTCTGAAGTGGAACAAGAAGGGAGATTTTCTTCTGACTGGGAGCTGCGACAAAACTGCAATAGTGTGGGATGTAAAAGCAGAGGA ATGGCGTCAACAGTTTGAGTTCCATGCAGGTCCCATACTTGATGTTGATTGGCGCAACAATGTTTCATTTGCCACAAGTTCCACGGATAATATGATATAT GTTTGCAAAGTTGGTGAGACACGGCCCATCAAGACATTTTCTGGCCATCAGGGGGAGGTTAATTGTGTTAAATGGGATCCAGCGGGCCAACTACTGGCAT CCTGCTCTGATGACATCAGTGCTAAGGAGTCCTTTTCTTATTTATGGTAA
AA sequence Show only first row Show all	>Lus10010384 pacid=23146088 polypeptide=Lus10010384 locus=Lus10010384.g ID=Lus10010384.BGIv1.0 annot-version=v1.0 MTSITSVELNYLVFRYLQESGFTHSAFALGYEAGINKCTIDGNMVPPGSLITFVQKGLQYLEMEANLSHSDADVEEDFSLLQPLELITKDVCELRQMIKE RKKSLQKERDKEKEKEKEKDKEKDKEKEKEKDRERDKEIEKDHERERACIREKERQEREKEAGKDRERIETEKEREKIHGDTTERGMIPDLEEKTIVKHG ENGTSGGVEPMDICTTSTSQACEINSSDVMILEGHTSEVCACAWSPTGSILASGSGDSTARIWTIAEGTSKSGNGPLSVLVLKHVKGKTNEKSKDVTTLD WNGEGTLLATGSYDGQARIWSTDGDLKSTLSKHKGPIFSLKWNKKGDFLLTGSCDKTAIVWDVKAEEWRQQFEFHAGPILDVDWRNNVSFATSSTDNMIY VCKVGETRPIKTFSGHQGEVNCVKWDPAGQLLASCSDDISAKESFSYLW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G67320		HOS15	high expression of osmotically...		Lus10010384 [exp]	0	1
AT2G01710			Chaperone DnaJ-domain superfam...		Lus10012736 [exp]	3.3	0.8935
AT1G03910			unknown protein		Lus10035558 [exp]	4.1	0.9234
AT1G03280			Transcription factor TFIIE, al...		Lus10019269 [exp]	6.3	0.8963
AT1G67325			Ran BP2/NZF zinc finger-like s...		Lus10006412 [exp]	9.4	0.9065
AT5G27540		MIRO1, EMB2473	embryo defective 2473, MIRO-re...		Lus10004474 [exp]	9.5	0.8939
AT2G41945			unknown protein		Lus10021080 [exp]	10.4	0.9032
AT1G03910			unknown protein		Lus10027605 [exp]	11.1	0.8542
AT5G01230			S-adenosyl-L-methionine-depend...		Lus10017186 [exp]	12.1	0.9060
AT4G32430			Pentatricopeptide repeat (PPR)...		Lus10021355 [exp]	17.5	0.8968
AT5G49555			FAD/NAD(P)-binding oxidoreduct...		Lus10014308 [exp]	18.9	0.8855

Compare expression of checked genes

Lus10010384 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.