Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G37380 748 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G48910 499 / 3e-170 LPA66 LOW PSII ACCUMULATION 66, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G66520 495 / 6e-169 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G02980 478 / 2e-162 OTP85 ORGANELLE TRANSCRIPT PROCESSING 85, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G40405 465 / 3e-157 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G06540 464 / 6e-157 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G29760 463 / 6e-155 OTP81 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G62890 456 / 4e-154 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G14820 452 / 8e-151 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G08070 452 / 1e-150 EMB3102, OTP82 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024971 [exp] 1201 / 0 AT4G37380 772 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10000110 [exp] 635 / 0 AT4G37380 413 / 9e-142 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10030053 [exp] 507 / 4e-172 AT1G08070 884 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10031423 [exp] 498 / 2e-169 AT5G66520 538 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10010909 [exp] 495 / 4e-168 AT5G66520 537 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10029344 [exp] 481 / 2e-163 AT5G06540 803 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10014298 [exp] 481 / 5e-163 AT5G66520 748 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10040680 [exp] 482 / 6e-162 AT2G29760 926 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10026006 [exp] 478 / 8e-162 AT5G66520 746 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G050200 [exp] 924 / 0 AT4G37380 817 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G239600 [exp] 593 / 0 AT5G59200 694 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 80, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.014G191200 [exp] 514 / 3e-176 AT5G48910 852 / 0.0 LOW PSII ACCUMULATION 66, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G168800 [exp] 503 / 3e-172 AT2G02980 860 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 85, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G012600 [exp] 499 / 6e-170 AT2G29760 540 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.018G071800 [exp] 499 / 5e-169 AT1G08070 606 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G369900 [exp] 493 / 9e-168 AT5G66520 512 / 2e-175 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G031600 [exp] 485 / 3e-163 AT3G15930 784 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G231200 [exp] 479 / 6e-163 AT5G66520 504 / 1e-172 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G044700 [exp] 484 / 3e-162 AT3G22690 582 / 0.0 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10010385 pacid=23146093 polypeptide=Lus10010385 locus=Lus10010385.g ID=Lus10010385.BGIv1.0 annot-version=v1.0 ATGTCCTCCGTCGCACTATTCCCCACTAATTCGCTTGCTAATATCGCCAGCCTTCCACCCTCCACCGTCAAGGGTCCAGCCCCGGAAAGACTTGCAGCAC TGATTGACAAATGCAAATCCGTGAACCAGCTCTTCCAAATCCACGCCTTCCTGTATCGCCATAACTTGAGCAACCACTCAATCCTCTCCTTCAAGCTGCA GAGGTCCTACTCCGGCACCGGCCGCCTTGACCACTCGCTTTCGATTTTCCGTCAGAACCGGAATCCCGATGTCTTCTTTTTCAGTTCAATCATCCATTCA CATTCCCTCCACAACCTCCACAAAGAGGCGCTCATGTTGTATGTCGAAATGCTGACCCAGAACGTCGCACCAAATGCTTTCACTTTCTCGTCGATTTTGA AGTCTTGCCGTCTTGAACCAGGGAAGGCATTGCATGGTCAAGCGGTGAAACTTGGTCTGGAATCAGATACGTACGTGAGGACTTGCTTGATGGACGTTTA TGCCGAAGGAGAAGATATCGAGTCTGCACGCAAGCTGTTTGATTCTATGCCTGAGAGGAATTTGGTTTCTATGACGGCGATGATTACCTGTTATGCTAAG TTTAGAATGCTTAGGGAGGCGAGAGTGTTTTTTAATGGGTTGAAGGAAAAGGATGTTGTGTGTTGGAATGTGATGATTGATGGGTATGTTCAATATGGAT CGCCATACGAGAGTTTGTTACTCTTTAGGCAGATGCTAAGGGCAAAGGTGAGACCAAACGAATCATCCATGGTCTCTGTTCTATCTGCCTGTTCTCAAAT TGGGGCTCTGGAGTCAGGGAGATGGGTTCACTGGTACGCTGAGAATCATGGGATCGATATTAATGTCCGGGTCGCCACTTCCTTGATTGACATGTACAGT AAATGTGGGAGCTTGGAGGAAGCTAGGCAGGTTTTCGAGAGGACTACTTACAAGGATGTAGTTGCCTGGAATTCAATGATAGTGGGGTATTCAATGCACG GGTTTAGCAAGGATGCATTGCATTTGTTTGATGAGATGTGCAGGCTAGGGTACAAACCAACCTATATAACTTTCATTGGCGTGCTGAATGCTTGCACTCA TGCCGGTTTGGTTCGCGAAGGACGGGAAGTTTTCTATTCCATGGCAGAAAAATACGGTATTGAGCCAAGGATCGAGCATTACGGGTGCATGGTAAACCTC CTTGGTCGTGCCGGCCATCTAGAAGAAGCTTACGAGCTCGTCAAGAACATGGAAATAGAACAAGACGTTATCTTATGGGGAGCTCTGTTGGGTGCTTGTA GAATTCACGGTAATGTTGCTTTAGGCGAGGAGATTGCCCGTTTTATGATCAACCAGAATCTTGCGAATCCTGGTACATATGTGCTTATGTCCAACATGTA CGCCGAGGCAAACGACTGGGAAGGATTAGCCGGGGTGAGGAAATTGATGAGAGAAAAAGGAGTAGAGAAAGAGCATGGTTGCAGCTCGATAGAAGTGAAG AATAAAGTGCACGAGTTCGTTGCTGGGGACTGGAGGCATCCGAAGAGCAGAGACATTCATAATATGGTAGAAGAAATGAATAAATGGGCTAAAGCTCATG GGCATAACCCTAGAATGGACACTGTATTGCACGATTTAGAGGAAGCAGAGAAGGGGCAGTCACTCGGAGCTCACAGTGAAAGACTCGCTACAGCCTTTGG GCTGATCAGTACTAAACCTGGGACTACAATACGGATTGTGAAGAACCTGAGGGTATGTCGAGATTGCCACACTGTTACAAAGTTGATCTCTAAGATAACT GGACGAAAGATTGTTATGAGAGATCGTAATCGTTTCCACCATTTTCAGGATGGGTCATGTTCTTGCAGGGATTACTGGTAA
AA sequence Show only first row Show all	>Lus10010385 pacid=23146093 polypeptide=Lus10010385 locus=Lus10010385.g ID=Lus10010385.BGIv1.0 annot-version=v1.0 MSSVALFPTNSLANIASLPPSTVKGPAPERLAALIDKCKSVNQLFQIHAFLYRHNLSNHSILSFKLQRSYSGTGRLDHSLSIFRQNRNPDVFFFSSIIHS HSLHNLHKEALMLYVEMLTQNVAPNAFTFSSILKSCRLEPGKALHGQAVKLGLESDTYVRTCLMDVYAEGEDIESARKLFDSMPERNLVSMTAMITCYAK FRMLREARVFFNGLKEKDVVCWNVMIDGYVQYGSPYESLLLFRQMLRAKVRPNESSMVSVLSACSQIGALESGRWVHWYAENHGIDINVRVATSLIDMYS KCGSLEEARQVFERTTYKDVVAWNSMIVGYSMHGFSKDALHLFDEMCRLGYKPTYITFIGVLNACTHAGLVREGREVFYSMAEKYGIEPRIEHYGCMVNL LGRAGHLEEAYELVKNMEIEQDVILWGALLGACRIHGNVALGEEIARFMINQNLANPGTYVLMSNMYAEANDWEGLAGVRKLMREKGVEKEHGCSSIEVK NKVHEFVAGDWRHPKSRDIHNMVEEMNKWAKAHGHNPRMDTVLHDLEEAEKGQSLGAHSERLATAFGLISTKPGTTIRIVKNLRVCRDCHTVTKLISKIT GRKIVMRDRNRFHHFQDGSCSCRDYW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G37380			Tetratricopeptide repeat (TPR)...		Lus10010385 [exp]	0	1
AT3G01480		ATCYP38, CYP38	ARABIDOPSIS CYCLOPHILIN 38, cy...		Lus10032151 [exp]	1.4	0.9507
AT5G66055		EMB16, EMB2036,...	EMBRYO DEFECTIVE 2036, EMBRYO ...		Lus10028399 [exp]	2.0	0.9373
AT4G27600		NARA5	GENES NECESSARY FOR THE ACHIE...		Lus10026867 [exp]	2.0	0.9496
AT4G01050		TROL	thylakoid rhodanese-like (.1)		Lus10005947 [exp]	2.4	0.9386
AT3G04760			Pentatricopeptide repeat (PPR-...		Lus10000554 [exp]	3.5	0.9300
AT4G01050		TROL	thylakoid rhodanese-like (.1)		Lus10029448 [exp]	4.2	0.9214
AT4G30825			Tetratricopeptide repeat (TPR)...		Lus10036601 [exp]	5.5	0.9207
AT3G19170		ATPREP1, ATZNMP	presequence protease 1 (.1.2)		Lus10019877 [exp]	5.8	0.9115
AT4G02790		EMB3129	EMBRYO DEFECTIVE 3129, GTP-bin...		Lus10014672 [exp]	5.9	0.9323
AT4G00370		PHT4;4, ANTR2	anion transporter 2, Major fac...		Lus10036366 [exp]	6.5	0.9172

Compare expression of checked genes

Lus10010385 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.