Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041676 [exp] 238 / 7e-80 ND / Lus10018646 [exp] 185 / 3e-60 ND / Lus10041677 [exp] 174 / 6e-55 ND / Lus10028987 [exp] 130 / 4e-38 ND / Lus10026135 [exp] 77 / 4e-17 ND / Lus10008678 [exp] 56 / 2e-09 ND / Lus10035524 [exp] 54 / 4e-09 ND / Lus10016944 [exp] 50 / 7e-08 ND / Lus10039441 [exp] 45 / 6e-06 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10010387 pacid=23146077 polypeptide=Lus10010387 locus=Lus10010387.g ID=Lus10010387.BGIv1.0 annot-version=v1.0 ATGGCATCTCCGTTTGTGTTGAACTCCAACAACCAATGGCTGGTTGCAGTTTCCGACCGCACCATCATTGTGACCGATCCAGGGCTGGATCTCAACATTG ACAACCTCCACAGCACCATAGAGCAGTGGCGGCAGATGGCTCGGGTCAGATCCAATTCCTTATCCACCCACCGCGAATTAGAATTGTTTAGGGTGGTCTT CTCCGCAAAAAACCTGGTGCAGCTCTCCACCGAAATCATCAACCTCCAGCTGTTCGTTAATCGGAAGGGGTTTATGTATTTCAACATCGGTGCCCCACAC ATGTACCTGAATCTTAAGGGACACACGAGCCTCGTCCGCCGCCTCAGCAATCTGTTCGATTGGTCAAAGTACGGCGTCAATGTTCCAATTCTCGTGGGCA TTACATGGAGCCGATCCGAATTGAACACGGGGAATCTGATGGTGAATAGCATAAGGGACGGGAACAAGGTGGAGTAG
AA sequence Show only first row Show all	>Lus10010387 pacid=23146077 polypeptide=Lus10010387 locus=Lus10010387.g ID=Lus10010387.BGIv1.0 annot-version=v1.0 MASPFVLNSNNQWLVAVSDRTIIVTDPGLDLNIDNLHSTIEQWRQMARVRSNSLSTHRELELFRVVFSAKNLVQLSTEIINLQLFVNRKGFMYFNIGAPH MYLNLKGHTSLVRRLSNLFDWSKYGVNVPILVGITWSRSELNTGNLMVNSIRDGNKVE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10010387 [exp]	0	1
AT3G11980		FAR2, MS2	MALE STERILITY 2, FATTY ACID R...		Lus10000852 [exp]	3.9	0.6731
AT1G21200	Trihelix		sequence-specific DNA binding ...		Lus10042805 [exp]	11.7	0.6642
AT1G17750		AtPEPR2	PEP1 receptor 2 (.1)		Lus10032945 [exp]	21.2	0.6362
AT5G16890			Exostosin family protein (.1)		Lus10013787 [exp]	27.3	0.6222
AT5G61310			Cytochrome c oxidase subunit V...		Lus10001454 [exp]	32.7	0.6454
AT1G60730			NAD(P)-linked oxidoreductase s...		Lus10037408 [exp]	40.5	0.6026
AT5G24860		ATFPF1, FPF1	ARABIDOPSIS FLOWERING PROMOTIN...		Lus10037510 [exp]	41.3	0.6387
AT4G00620		EMB3127	EMBRYO DEFECTIVE 3127, Amino a...		Lus10022670 [exp]	60.5	0.6064
AT3G02100			UDP-Glycosyltransferase superf...		Lus10015752 [exp]	60.9	0.5747
AT3G52730			ubiquinol-cytochrome C reducta...		Lus10017043 [exp]	61.0	0.6125

Compare expression of checked genes

Lus10010387 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.