Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G14960 877 / 0 GH3.1 Auxin-responsive GH3 family protein (.1) AT4G37390 876 / 0 AUR3, YDK1, GH3-2, BRU6 YADOKARI 1, AUXIN UPREGULATED 3, Auxin-responsive GH3 family protein (.1) AT2G23170 854 / 0 GH3.3 Auxin-responsive GH3 family protein (.1) AT1G59500 820 / 0 GH3.4 Auxin-responsive GH3 family protein (.1) AT5G54510 754 / 0 DFL1, GH3.6 DWARF IN LIGHT 1, Auxin-responsive GH3 family protein (.1) AT4G27260 748 / 0 GH3.5, WES1 Auxin-responsive GH3 family protein (.1) AT1G28130 622 / 0 GH3.17 Auxin-responsive GH3 family protein (.1.2) AT2G47750 580 / 0 GH3.9 putative indole-3-acetic acid-amido synthetase GH3.9 (.1) AT1G23160 547 / 0 Auxin-responsive GH3 family protein (.1) AT5G13320 520 / 2e-179 WIN3, GDG1, PBS3, GH3.12 HOPW1-1-INTERACTING 3, AVRPPHB SUSCEPTIBLE 3, GRETCHEN HAGEN 3.12, GH3-LIKE DEFENSE GENE 1, Auxin-responsive GH3 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014869 [exp] 1128 / 0 AT4G37390 858 / 0.0 YADOKARI 1, AUXIN UPREGULATED 3, Auxin-responsive GH3 family protein (.1) Lus10026600 [exp] 966 / 0 AT2G14960 950 / 0.0 Auxin-responsive GH3 family protein (.1) Lus10013887 [exp] 966 / 0 AT2G14960 949 / 0.0 Auxin-responsive GH3 family protein (.1) Lus10014804 [exp] 729 / 0 AT5G54510 977 / 0.0 DWARF IN LIGHT 1, Auxin-responsive GH3 family protein (.1) Lus10003598 [exp] 727 / 0 AT5G54510 981 / 0.0 DWARF IN LIGHT 1, Auxin-responsive GH3 family protein (.1) Lus10039723 [exp] 680 / 0 AT5G54510 855 / 0.0 DWARF IN LIGHT 1, Auxin-responsive GH3 family protein (.1) Lus10018510 [exp] 672 / 0 AT5G54510 859 / 0.0 DWARF IN LIGHT 1, Auxin-responsive GH3 family protein (.1) Lus10005151 [exp] 384 / 1e-126 AT2G46370 784 / 0.0 JASMONATE RESISTANT 1, FAR-RED INSENSITIVE 219, Auxin-responsive GH3 family protein (.1.2.3.4) Lus10003039 [exp] 379 / 2e-124 AT2G46370 784 / 0.0 JASMONATE RESISTANT 1, FAR-RED INSENSITIVE 219, Auxin-responsive GH3 family protein (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G298300 [exp] 915 / 0 AT2G14960 1016 / 0.0 Auxin-responsive GH3 family protein (.1) Potri.009G092900 [exp] 908 / 0 AT2G14960 1014 / 0.0 Auxin-responsive GH3 family protein (.1) Potri.007G050300 [exp] 907 / 0 AT2G14960 959 / 0.0 Auxin-responsive GH3 family protein (.1) Potri.013G151100 [exp] 749 / 0 AT5G54510 1014 / 0.0 DWARF IN LIGHT 1, Auxin-responsive GH3 family protein (.1) Potri.001G410400 [exp] 744 / 0 AT5G54510 1109 / 0.0 DWARF IN LIGHT 1, Auxin-responsive GH3 family protein (.1) Potri.011G129700 [exp] 743 / 0 AT5G54510 1088 / 0.0 DWARF IN LIGHT 1, Auxin-responsive GH3 family protein (.1) Potri.001G069000 [exp] 610 / 0 AT1G28130 901 / 0.0 Auxin-responsive GH3 family protein (.1.2) Potri.002G206400 [exp] 610 / 0 AT2G47750 865 / 0.0 putative indole-3-acetic acid-amido synthetase GH3.9 (.1) Potri.003G161300 [exp] 591 / 0 AT1G28130 910 / 0.0 Auxin-responsive GH3 family protein (.1.2) Potri.014G095500 [exp] 374 / 2e-122 AT2G46370 790 / 0.0 JASMONATE RESISTANT 1, FAR-RED INSENSITIVE 219, Auxin-responsive GH3 family protein (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0378 [flax] [poplar] ANL PF03321 [flax] [poplar] GH3 GH3 auxin-responsive promoter
Representative CDS sequence Show only first row Show all	>Lus10010391 pacid=23146080 polypeptide=Lus10010391 locus=Lus10010391.g ID=Lus10010391.BGIv1.0 annot-version=v1.0 ATGGCCGTGGATTCCGCTACACCGTCCCCTCTCGGACCTCCAGCCTGCGAGAAAGACCGTAAGGCCCTCGACTTCATCCAAGACGTCACCAAGAACGCTG ACTCGGTGCAAGAGCGTGTCCTCGCTGAGATACTGCGGAGGAACTCGGAGACGGAGTATCTCCAGAGGTTCGGCCTTGACGACGCTACTGACAGGGAAAC GTTCAAGTCCAAGATCCCCGTCGTCACTTATGAGGATCTTGTCCCGGAGATCCAACGTATCGCAAATGGCGACCGCTCCCCTATCCTTTCTTCTCACCCT ATCTCTGAGTTCCTCACAAGTTCTGGGACTTCTGCTGGGGAAAGGAAACTGATGCCAGCTATTGAAGAGGACTTGGAACGTCGCCAGCTTCTTTACAGCC TTCTCACTCCCGTTATGAACATATGTGTGCAGGGACTGGACAAAGGAAAGGCGCTATACTTCTACTTTATAAAAGCGGAGTCAAAGACGCCAGGGGGGCT ACCGGCCCGACCCGTTCTAACAAGTTACTATAAGAGCGATATTTTCAAGAACCGACCATACGACCCATACAATGTAATCACCAGTCCAACCGAGGCAATC CTCTGCGTCGACTCCTACCAGAGCATGTACACCCAGATGCTCTGCGGCCTCGTCATGCGCCATGACGTCCTTCGTGTCGGAGCAGTCTTCGCCTCTGGCC TCCTCAAGGCCATCCGCTTCCTCCAGCTCAACTGGGACCACCTCGTCCATGACATCAGGACCGGTTCTCTAAACCCTAAGGTAACCGATCCCTCCATCCG AAACTGCACTGTTATCCAATCCCTGAAACCCAACCCGGAGCTAGCAGAGTTCATTACCCAGGAGTGCTCATGCAAGAATTGGGAAGGGATCCTTACCCGA ATCTGGCCTAATACCAAGTACCTTGACGTGATTGGGACTGGAGCCATGGCTCAGTACATTCCGACTCTCGAGTATTACAGCAACGGCTTGCCCATGACTT GCACCATGTATGCCTCATCCGAGAGCTATTTCGGACTTAACTTGAACCCGATGTGTAAGCCTTCTGAGGTGTCCTACACTTTGATGCCAAACATGTGTTA CTACGAGTTCTTGCCACACGATCCTAAAAGATCCGACGATGAGGATACTAAGCTGGACCTAGGAGGAGGAGGAGGAACACGTAATCTGATTGACCTTGCT GACGTGGAGTTAGGGAAAGAGTACGAGCTGATCATCACTACCTACTCGGGACTGTGCCGGTACGTGGTAGGTGACATTCTTAAGGTGACAGGGTTCCACA ACGCGGCTCCACAGTTTCGGTTCATCAGGAGGAAGAACGTCCTGCTCAGTATTGACTCGGACAAGACTGACGAGTCGGAGCTTCAGAAGGCTGTGGAGAG CGCGTCAAGGCTGTTGAAGGAGTTTGAGACGCGCGTGGTGGAATACACCAGCTACGCCGATACAAAGACGATCCCAGGACACTACGCAGTGTTTTGGGAG CTGATGTCGAAGAATGGTTGTTACCCGACGGATGAAGTTCTGGAGGCGTGTTGCCTGGCGATGGAGGAAGAGCTGAACTCGGTGTACAGGCAAGGGAGGG TGATTGAGTCGATTGGGCCGCTGGAGATAAGAGTGGTCCAAAGTGGGACGTTTGAGGAGCTGATGGATTACGCAATCTCGAGAGGCGCGTCGATTAACCA GTACAAAGTGCCGAGGTGTGTAAGCTTTACTCCCATTATGGAACTGTTGGATGCCAGGGTCGTGTCCAAACATCTTAGCCCTTCCCTTCCTCATTACTCC TGCGAACGACAGGGCTGA
AA sequence Show only first row Show all	>Lus10010391 pacid=23146080 polypeptide=Lus10010391 locus=Lus10010391.g ID=Lus10010391.BGIv1.0 annot-version=v1.0 MAVDSATPSPLGPPACEKDRKALDFIQDVTKNADSVQERVLAEILRRNSETEYLQRFGLDDATDRETFKSKIPVVTYEDLVPEIQRIANGDRSPILSSHP ISEFLTSSGTSAGERKLMPAIEEDLERRQLLYSLLTPVMNICVQGLDKGKALYFYFIKAESKTPGGLPARPVLTSYYKSDIFKNRPYDPYNVITSPTEAI LCVDSYQSMYTQMLCGLVMRHDVLRVGAVFASGLLKAIRFLQLNWDHLVHDIRTGSLNPKVTDPSIRNCTVIQSLKPNPELAEFITQECSCKNWEGILTR IWPNTKYLDVIGTGAMAQYIPTLEYYSNGLPMTCTMYASSESYFGLNLNPMCKPSEVSYTLMPNMCYYEFLPHDPKRSDDEDTKLDLGGGGGTRNLIDLA DVELGKEYELIITTYSGLCRYVVGDILKVTGFHNAAPQFRFIRRKNVLLSIDSDKTDESELQKAVESASRLLKEFETRVVEYTSYADTKTIPGHYAVFWE LMSKNGCYPTDEVLEACCLAMEEELNSVYRQGRVIESIGPLEIRVVQSGTFEELMDYAISRGASINQYKVPRCVSFTPIMELLDARVVSKHLSPSLPHYS CERQG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G37390		AUR3, YDK1, GH3...	YADOKARI 1, AUXIN UPREGULATED ...		Lus10010391 [exp]	0	1
AT5G09360		LAC14	laccase 14 (.1)		Lus10006157 [exp]	3.7	0.9802
AT1G62420			Protein of unknown function (D...		Lus10003258 [exp]	5.7	0.9723
AT2G43840		UGT74F1	UDP-glycosyltransferase 74 F1 ...		Lus10008742 [exp]	7.2	0.9755
AT1G17860			Kunitz family trypsin and prot...		Lus10013730 [exp]	8.5	0.9707
AT3G22370		AtHSR3, ATAOX1A...	hyper-sensitivity-related 3, a...		Lus10035670 [exp]	9.6	0.9748
AT1G17860			Kunitz family trypsin and prot...		Lus10039210 [exp]	11.2	0.9702
AT5G06730			Peroxidase superfamily protein...		Lus10027984 [exp]	11.9	0.9363
AT1G17860			Kunitz family trypsin and prot...		Lus10007892 [exp]	13.6	0.9696
AT1G17860			Kunitz family trypsin and prot...		Lus10030355 [exp]	16.2	0.9502
AT1G17860			Kunitz family trypsin and prot...		Lus10013731 [exp]	17.9	0.9661

Compare expression of checked genes

Lus10010391 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.