Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G24204 84 / 4e-21 RING/U-box superfamily protein (.1.2.3) AT2G38185 61 / 4e-11 RING/U-box superfamily protein (.1.2.3.4) AT2G38195 51 / 9e-08 RING/U-box superfamily protein (.1.2) AT1G63900 51 / 1e-07 DAL1 DIAP1-like protein 1, E3 Ubiquitin ligase family protein (.1.2) AT2G38220 50 / 3e-07 RING/U-box superfamily protein (.1) AT4G14365 49 / 4e-07 XBAT34 XB3 ortholog 4 in Arabidopsis thaliana (.1) AT5G01450 49 / 4e-07 RING/U-box superfamily protein (.1) AT3G23280 49 / 7e-07 XBAT35 XB3 ortholog 5 in Arabidopsis thaliana (.1.2) AT1G54150 48 / 8e-07 E3 Ubiquitin ligase family protein (.1) AT3G53410 47 / 1e-06 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002487 [exp] 64 / 5e-12 AT5G01450 347 / 5e-115 RING/U-box superfamily protein (.1) Lus10004813 [exp] 59 / 2e-10 AT2G38185 309 / 2e-100 RING/U-box superfamily protein (.1.2.3.4) Lus10000533 [exp] 54 / 1e-08 AT1G54150 349 / 5e-119 E3 Ubiquitin ligase family protein (.1) Lus10027994 [exp] 52 / 6e-08 AT1G63900 532 / 0.0 DIAP1-like protein 1, E3 Ubiquitin ligase family protein (.1.2) Lus10003551 [exp] 47 / 1e-06 AT3G23280 115 / 5e-30 XB3 ortholog 5 in Arabidopsis thaliana (.1.2) Lus10008163 [exp] 47 / 2e-06 AT1G63900 533 / 0.0 DIAP1-like protein 1, E3 Ubiquitin ligase family protein (.1.2) Lus10037412 [exp] 47 / 3e-06 AT3G09770 351 / 6e-120 LOSS OF GDU 2, RING/U-box superfamily protein (.1.2) Lus10041300 [exp] 47 / 3e-06 AT3G09770 352 / 3e-120 LOSS OF GDU 2, RING/U-box superfamily protein (.1.2) Lus10023182 [exp] 46 / 6e-06 AT3G09770 364 / 5e-126 LOSS OF GDU 2, RING/U-box superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G050500 [exp] 101 / 3e-27 AT4G24204 81 / 4e-20 RING/U-box superfamily protein (.1.2.3) Potri.014G020900 [exp] 88 / 1e-20 AT5G01450 116 / 9e-29 RING/U-box superfamily protein (.1) Potri.001G251900 [exp] 66 / 1e-12 AT5G01450 327 / 7e-108 RING/U-box superfamily protein (.1) Potri.006G100400 [exp] 64 / 4e-12 AT2G38185 341 / 2e-113 RING/U-box superfamily protein (.1.2.3.4) Potri.016G116300 [exp] 64 / 5e-12 AT5G01450 348 / 3e-116 RING/U-box superfamily protein (.1) Potri.003G065500 [exp] 53 / 2e-08 AT1G54150 341 / 3e-115 E3 Ubiquitin ligase family protein (.1) Potri.014G138000 [exp] 53 / 2e-08 AT1G63900 548 / 0.0 DIAP1-like protein 1, E3 Ubiquitin ligase family protein (.1.2) Potri.001G168700 [exp] 53 / 3e-08 AT1G54150 301 / 1e-99 E3 Ubiquitin ligase family protein (.1) Potri.006G128700 [exp] 47 / 2e-06 AT3G09770 380 / 4e-131 LOSS OF GDU 2, RING/U-box superfamily protein (.1.2) Potri.005G225300 [exp] 45 / 1e-05 AT3G23280 355 / 2e-118 XB3 ortholog 5 in Arabidopsis thaliana (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10010392 pacid=23146078 polypeptide=Lus10010392 locus=Lus10010392.g ID=Lus10010392.BGIv1.0 annot-version=v1.0 ATGGGCGCCATTTCTGACAGAGGAGGAGGTGAATGGTCTTCCTTGCTTGTTCTTCTTGCCAATCTACTGGCTTACTTCATGGTTTTAGGTTCCCTGCTTC TCAAACACAACTCTCTTCTCCACAGTTCCAGGCCCTGGTTTGTAATCATAATGATCTTTCTGGTGCTGAAAATCTCGTCTTATTTCGTGAATGTGACGGA GGAAGAAGCAGCAGGGGAGGATGCAATTGAAATTGATCCATTGCTACTCCAACAGAAAACGGCTGTCTTATATGCTTATTATGGAACTTGTGGTGACCAT CAAGAGTCCCTGGCGGCTGCAACTTGTAGTAGCAGCAGCAGCAGCTCCTCCTCCAATGGAGTAGCAGCTCATGATGACAATCATGGTTCGGATGATCAAG TCAAATTGTGCGTGATATGCTACGATGAGGAACGAAATTCATTCTTTGTTCCTTGTGGCCACTCCGCTACTTGTCTTGCTTGTGCTCGAAGGATCTATAA TGAGGAAAACAAGGTTTGCCCAGTATGTAGAAGATTGATTGGCAGAGTCAAGAAACTCTGA
AA sequence Show only first row Show all	>Lus10010392 pacid=23146078 polypeptide=Lus10010392 locus=Lus10010392.g ID=Lus10010392.BGIv1.0 annot-version=v1.0 MGAISDRGGGEWSSLLVLLANLLAYFMVLGSLLLKHNSLLHSSRPWFVIIMIFLVLKISSYFVNVTEEEAAGEDAIEIDPLLLQQKTAVLYAYYGTCGDH QESLAAATCSSSSSSSSSNGVAAHDDNHGSDDQVKLCVICYDEERNSFFVPCGHSATCLACARRIYNEENKVCPVCRRLIGRVKKL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G24204			RING/U-box superfamily protein...		Lus10010392 [exp]	0	1
AT3G10150		ATPAP16, PAP16	purple acid phosphatase 16 (.1...		Lus10005170 [exp]	3.5	0.7094
AT2G01770		ATVIT1, VIT1	vacuolar iron transporter 1 (....		Lus10003704 [exp]	5.7	0.7490
AT1G02335		GL22	germin-like protein subfamily ...		Lus10004857 [exp]	8.4	0.7469
					Lus10006529 [exp]	31.2	0.6099
AT1G17930			Aminotransferase-like, plant m...		Lus10011644 [exp]	32.4	0.6180
AT5G53910			RING/U-box superfamily protein...		Lus10011380 [exp]	32.4	0.6099
					Lus10013260 [exp]	33.7	0.6099
AT3G13790		ATCWINV1, ATBFR...	ARABIDOPSIS THALIANA CELL WALL...		Lus10015614 [exp]	34.9	0.6099
					Lus10035557 [exp]	36.0	0.6099
					Lus10005297 [exp]	37.1	0.6099

Compare expression of checked genes

Lus10010392 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.